FHIR Chat · IG-Case Reporting

Stream: OpenHIE

Topic: IG-Case Reporting

Carl Leitner (Jan 28 2021 at 12:58):

hey @Jose Costa Teixeira thanks for creating the stub for the Case Reporting IG https://github.com/openhie/case-reporting

Carl Leitner (Jan 28 2021 at 12:59):

I added some front-matter for review and can generate it locally. Not sure what I need to do to push it to gh-pages. I already have the gh-pages branch createdf.

Carl Leitner (Jan 28 2021 at 13:01):

we should also put a back-reference from the HIV-IG to the case report IG when it's published. flagging for @Elliot Silver for the same on the covid-ig

Jose Costa Teixeira (Jan 28 2021 at 13:02):

I'm filling that in today with some initial content (i got stuck in a publication step)

Jose Costa Teixeira (Jan 28 2021 at 13:02):

about the gh-pages, i'll check if all is there

Carl Leitner (Jan 28 2021 at 13:03):

also, i added some .css to the openhie.css but it doesn't seem to want to stick when generated. any suggestions here? https://github.com/openhie/case-reporting/commit/46668c7f8de0156c6e44c6247d273439414eef0b

Carl Leitner (Jan 28 2021 at 13:07):

what ends up in output/../../openhie.css is the original css which is strange

Jose Costa Teixeira (Jan 28 2021 at 13:08):

yes, and it's my bad for not informing: the openhie template is finally working,

Jose Costa Teixeira (Jan 28 2021 at 13:08):

so the local template is no longer used.

Jose Costa Teixeira (Jan 28 2021 at 13:11):

https://openhie.github.io/case-reporting/ is now working (and brings me 2 issues to fix)

Carl Leitner (Jan 28 2021 at 13:28):

so move the .css changes to the openhie-template in which branch?

Jose Costa Teixeira (Jan 28 2021 at 13:30):

are these local changes or fixes that should be applied to all openhie igs?

Carl Leitner (Jan 28 2021 at 13:30):

to all openhie igs, it's for better formatting of definition lists

Carl Leitner (Jan 28 2021 at 13:31):

also, does that mean we can remote the openhie-template from the case-reporting ?

Jose Costa Teixeira (Jan 28 2021 at 13:31):

yes, we can

Jose Costa Teixeira (Jan 28 2021 at 13:42):

No we can't

Carl Leitner (Jan 28 2021 at 15:15):

thanks @Jose Costa Teixeira for getting the build going https://openhie.github.io/case-reporting/

Carl Leitner (Jan 28 2021 at 15:16):

two issues i noticed. plantuml is not generating and the feedback form isn't there... not urgent.

Jose Costa Teixeira (Jan 28 2021 at 16:37):

Yes, I'm fixing those now.

Jose Costa Teixeira (Jan 28 2021 at 16:38):

reason for this is that while the openhie template is not trusted, we need to use a local template which is based on fhir-base. And the fhir-base template has been upgraded recently

Elliot Silver (Jan 28 2021 at 17:00):

Is there a change I should be making for templates here?

Jose Costa Teixeira (Jan 28 2021 at 18:37):

I will need to stabilize this today (see where in the stack the issue is), then I'll see the gaps in the profiles afterwards

Carl Leitner (Jan 29 2021 at 11:36):

Case report IG structure has been updated to match more closely the IhE Supply one. https://openhie.github.io/case-reporting/toc.html

Carl Leitner (Jan 29 2021 at 11:39):

@Daniel Futerman @Richard Stanley @Ryan Crichton I put a place holder section for Instant OpenHIE. Can we talk about what goes in here? I think stuff like ports opened, naming api end points, software stack and kubernetes deployment info or so

Carl Leitner (Jan 29 2021 at 11:39):

Does that sound right?

Carl Leitner (Jan 29 2021 at 13:32):

@Elliot Silver are you still working on the composition profile https://openhie.github.io/covid-ig/StructureDefinition-WhoCrComposition.html for the hiv-ig or can we start moving it to the case-reporting IG?

Richard Stanley (Jan 29 2021 at 15:35):

I'm not sure if Instant should be in the IG. Workflows are not really instant-specific, they could be used by anyone with a FHIR server I should think. Maybe tests or something like that - that Instant and other tools use? I'm not familiar with IG authorship.

Elliot Silver (Jan 29 2021 at 16:39):

I expect the composition will need further updates--I was expecting it to be COVID-19 specific (did you mean to say covid-ig or hiv-ig)? It may be possible to move some part to the base CR IG and then profile further in the COVID IG.

Jose Costa Teixeira (Jan 29 2021 at 16:40):

Is the Composition something that can be used generically by others, including the HIV stuff?

Elliot Silver (Jan 29 2021 at 16:41):

I suspect things like "it must point to a patient" can be generic, but "it must have observations of COVID co-morbidities" will be specific.

Carl Leitner (Jan 29 2021 at 18:51):

@Jose Costa Teixeira , summarizing a chat with @Elliot Silver the plan will be to have a generic Composition, Q and QR, Provenance profiles with some basic constraints in the case-report IG to show how they link and then profile those within the covid, HIV or other content profiles...