Stream: shorthand
Topic: profiles with mapping
John Moehrke (Dec 17 2020 at 23:31):
Is there support in FSH for defining mapping tables in a profile written in sushi?
Elliot Silver (Dec 17 2020 at 23:31):
Nothing special. Just fill in the mapping elements.
John Moehrke (Dec 17 2020 at 23:32):
example? or explaination?
John Moehrke (Dec 17 2020 at 23:33):
or better... you have rights on the IHE github for MHD... can you do the mapping for FHIR List to XDS SubmissionSet?
Elliot Silver (Dec 17 2020 at 23:33):
Elliot Silver (Dec 17 2020 at 23:34):
Oh, hold on, are you talking mappings in structure defs, or conceptmaps?
John Moehrke (Dec 17 2020 at 23:35):
right. mapping in a structureDefinition... NOT a conceptmap
Elliot Silver (Dec 17 2020 at 23:35):
In my structure def:
* mapping[0].identity = "WhoCrDataDictionarySpreadsheet"
* mapping[0].name = "WHO CR Data Dictionary Spreadsheet 2020.2"
* mapping[1].identity = "LOINC"
* mapping[1].uri = $LNC
...
* differential.element[2].mapping[0].identity = "WhoCrDataDictionarySpreadsheet"
* differential.element[2].mapping[0].map = "report_date"
* differential.element[2].mapping[1].identity = "LOINC"
* differential.element[2].mapping[1].map = $LNC#77995-9
John Moehrke (Dec 17 2020 at 23:36):
but I am defining a profile, with constraints. I also want that to carry mappings to XDS
Elliot Silver (Dec 17 2020 at 23:39):
So, for you...
* mapping[0].identity = "XDS"
* mapping[0].name = "Document Sharing Metadata (XDS)"
...
* differential.element[2].mapping[0].identity = "XDS"
* differential.element[2].mapping[0].map = "eventCodeList"
Elliot Silver (Dec 17 2020 at 23:42):
It doesn't look like the mapping is intended to be computable, so you can enter in whatever text in the map element you need. I've also done a couple with multiple mappings for the same StructureDocument element:
* mapping[0].identity = "XDS"
* mapping[0].name = "Document Sharing Metadata (XDS)"
...
* differential.element[2].mapping[0].identity = "XDS"
* differential.element[2].mapping[0].map = "eventCodeList"
* differential.element[2].mapping[1].identity = "XDS"
* differential.element[2].mapping[1].map = "formatCode"
This shows as a comma separated list.
John Moehrke (Dec 17 2020 at 23:46):
okay. I will try.. but feel free to put in a pull request on MHD
Elliot Silver (Dec 17 2020 at 23:59):
Just let me know if you run into a snag.
Chris Moesel (Dec 18 2020 at 15:31):
So I guess that defining mappings is not a very well-known feature of FHIR Shorthand, but it is indeed a feature! And you don't have to use caret syntax to use it (although I noticed that @Elliot Silver's examples aren't using ^ either -- are those Instances of StructureDefinition rather than FSH Profiles? Because those examples definitely wouldn't work in a Profile: definition).
For information about FSH Mapping (and an example), see: http://hl7.org/fhir/uv/shorthand/reference.html#defining-mappings
Elliot Silver (Dec 18 2020 at 17:09):
@Chris Moesel , correct, I'm using an instance to define a logical model. I had forgotten about the mapping feature, but since I'm working with a LM, it wouldn't work for me anyhow.
John Moehrke (Dec 22 2020 at 15:07):
Thanks @Chris Moesel . I was not sure if this had been added. I had asked for it long long ago... I will give that a try.
John Moehrke (Dec 31 2020 at 13:03):
mapping is working excellent.
John Moehrke (Dec 31 2020 at 13:31):
I do have one problem... that mandatory extension... seems to disappear in the mapping. Not clear to me if this is sushi or IG build
John Moehrke (Dec 31 2020 at 16:15):
Note that when I add the extension to a profile as 1..* that extension shows up in mapping. But when I define mapping on a profile that has the extension at 0..; a profile derived off of that profile and that sets the cardinality to 1.. will no longer show the mapping for that extension. yet the profile with 0..* does show the mapping.
I think this is the IG build problem. My eyes say the structure definitions created are good. @Grahame Grieve let me know how I can help clarify. I use this for both Folders and SubmissionSets in the current MHD IG build https://github.com/IHE/ITI.MHD
Brian Kaney (Mar 10 2021 at 21:44):
Hi @Chris Moesel and others -- on Mappings (I am starting to use now!) how could I express that a certain target (let's say it's called rxnorm) is in FHIR medicationCodeableConcept.coding.code where medicationCodeableConcept.coding.system is http://www.nlm.nih.gov/research/umls/rxnorm?
Also, any idea on how to turn off (in the IG published output) the other Mappings? I just want to render the ones I specify in FSH?
Last updated: Apr 12 2022 at 19:14 UTC
