Stream: shorthand
Topic: FSH crashing?
Grahame Grieve (Nov 17 2020 at 01:19):
I'm running https://github.com/openhie/covid-ig/tree/es-working from the Ig publisher, and getting this output:
Grahame Grieve (Nov 17 2020 at 01:19):
Run Sushi on C:\work\org.hl7.fhir.igs\covid-ig (00:00.0012)
Sushi: info Running SUSHI v1.0.1 (implements FHIR Shorthand specification v1.0.0) (00:00.0467)
Sushi: info Arguments: (00:00.0467)
Sushi: info --out C:\work\org.hl7.fhir.igs\covid-ig (00:00.0468)
Sushi: info C:\work\org.hl7.fhir.igs\covid-ig (00:00.0468)
Sushi: info Using configuration file: C:\work\org.hl7.fhir.igs\covid-ig\sushi-config.yaml (00:00.0471)
Sushi: info Importing FSH text... (00:00.0477)
Sushi: info Preprocessed 14 documents with 24 aliases. (00:00.0672)
Sushi: info Imported 17 definitions and 58 instances. (00:00.0700)
Sushi: info Checking local cache for hl7.fhir.us.core#current... (00:00.0700)
Sushi: info Found hl7.fhir.us.core#current in local cache. (00:00.0736)
Sushi: info Checking local cache for hl7.fhir.uv.sdc#current... (00:00.0737)
Sushi: info Found hl7.fhir.uv.sdc#current in local cache. (00:00.0769)
Sushi: info Checking local cache for hl7.fhir.r4.core#4.0.1... (00:00.0769)
Sushi: info Found hl7.fhir.r4.core#4.0.1 in local cache. (00:01.0278)
Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:01.0279)
Sushi: info Loaded package hl7.fhir.us.core#current (00:06.0059)
Sushi: info Loaded package hl7.fhir.uv.sdc#current (00:06.0061)
Sushi: info Converting FSH to FHIR resources... (00:06.0069)
Sushi: info Converted 2 FHIR StructureDefinitions. (00:06.0194)
Sushi: info Converted 11 FHIR ValueSets. (00:06.0260)
Sushi: info Converted 4 FHIR CodeSystems. (00:06.0276)
Sushi: error Structure Definition http://openhie.github.io/covid-19/StructureDefinition/WhoCrComposition is missing snapshot. Snapshot is required for import. (00:06.0278)
Sushi: error Structure Definition http://openhie.github.io/covid-19/StructureDefinition/WhoCrPatient is missing snapshot. Snapshot is required for import. (00:07.0490)
Sushi: info Converted 58 FHIR instances. (00:15.0157)
Sushi: info Exporting FHIR resources as JSON... (00:15.0157)
Grahame Grieve (Nov 17 2020 at 01:19):
nothing further....
Grahame Grieve (Nov 17 2020 at 01:20):
I've waited a loooooong time and got nothing more
Chris Moesel (Nov 17 2020 at 02:53):
It's working fine for me:
Run Sushi on /Users/cmoesel/dev/HL7/covid-ig (00:00.0037)
Sushi: npx: installed 111 in 7.295s (00:07.0441)
Sushi: info Running SUSHI v1.0.1 (implements FHIR Shorthand specification v1.0.0) (00:07.0772)
Sushi: info Arguments: (00:07.0773)
Sushi: info --out /Users/cmoesel/dev/HL7/covid-ig (00:07.0773)
Sushi: info /Users/cmoesel/dev/HL7/covid-ig (00:07.0773)
Sushi: info Using configuration file: /Users/cmoesel/dev/HL7/covid-ig/sushi-config.yaml (00:07.0793)
Sushi: info Importing FSH text... (00:07.0800)
Sushi: info Preprocessed 14 documents with 24 aliases. (00:08.0005)
Sushi: info Imported 17 definitions and 58 instances. (00:08.0033)
Sushi: info Checking local cache for hl7.fhir.us.core#current... (00:08.0034)
Sushi: info Found hl7.fhir.us.core#current in local cache. (00:08.0116)
Sushi: info Checking local cache for hl7.fhir.uv.sdc#current... (00:08.0117)
Sushi: info Found hl7.fhir.uv.sdc#current in local cache. (00:08.0178)
Sushi: info Checking local cache for hl7.fhir.r4.core#4.0.1... (00:08.0179)
Sushi: info Found hl7.fhir.r4.core#4.0.1 in local cache. (00:09.0588)
Sushi: info Loaded package hl7.fhir.r4.core#4.0.1 (00:09.0588)
Sushi: info Loaded package hl7.fhir.uv.sdc#current (00:11.0372)
Sushi: info Loaded package hl7.fhir.us.core#current (00:11.0412)
Sushi: info Converting FSH to FHIR resources... (00:11.0419)
Sushi: info Converted 2 FHIR StructureDefinitions. (00:11.0529)
Sushi: info Converted 11 FHIR ValueSets. (00:11.0574)
Sushi: info Converted 4 FHIR CodeSystems. (00:11.0586)
Sushi: info Converted 58 FHIR instances. (00:21.0107)
Sushi: info Exporting FHIR resources as JSON... (00:21.0108)
Sushi: info Exported 75 FHIR resources as JSON. (00:21.0148)
Sushi: info Assembling Implementation Guide sources... (00:21.0149)
Sushi: info Generated ImplementationGuide-who.cr.covid19.json (00:21.0159)
Sushi: info Assembled Implementation Guide sources; ready for IG Publisher. (00:21.0160)
Sushi: (00:21.0161)
Sushi: ╔════════════════════════ SUSHI RESULTS ══════════════════════════╗ (00:21.0161)
Sushi: ║ ╭──────────┬────────────┬───────────┬─────────────┬───────────╮ ║ (00:21.0162)
Sushi: ║ │ Profiles │ Extensions │ ValueSets │ CodeSystems │ Instances │ ║ (00:21.0162)
Sushi: ║ ├──────────┼────────────┼───────────┼─────────────┼───────────┤ ║ (00:21.0163)
Sushi: ║ │ 2 │ 0 │ 11 │ 4 │ 58 │ ║ (00:21.0164)
Sushi: ║ ╰──────────┴────────────┴───────────┴─────────────┴───────────╯ ║ (00:21.0164)
Sushi: ║ ║ (00:21.0165)
Sushi: ╠═════════════════════════════════════════════════════════════════╣ (00:21.0166)
Sushi: ║ You earned a PhD in Ichthyology! 0 Errors 0 Warnings ║ (00:21.0167)
Sushi: ╚═════════════════════════════════════════════════════════════════╝ (00:21.0192)
Chris Moesel (Nov 17 2020 at 02:56):
Note that you're getting two errors that I'm not getting:
Sushi: error Structure Definition http://openhie.github.io/covid-19/StructureDefinition/WhoCrComposition is missing snapshot. Snapshot is required for import. (00:06.0278)
Sushi: error Structure Definition http://openhie.github.io/covid-19/StructureDefinition/WhoCrPatient is missing snapshot. Snapshot is required for import. (00:07.0490)
I'm not sure what that's about. Are you sure you've pulled the latest and your local repo is clean (e.g., no extra files that shouldn't be there)? It looks almost like you or someone copied some SUSHI outputs into other input/* folders.
Elliot Silver (Nov 17 2020 at 02:57):
Ah, @Grahame Grieve tried to run sushi 0.15 on input/fsh first, I wonder if that messed it up?
Grahame Grieve (Nov 17 2020 at 04:17):
yes it was
Chris Moesel (Nov 17 2020 at 06:48):
OK. And that is exactly why we decided to move away from that approach (outputting generated SUSHI files directly into input/*). It's always nice to have that decision confirmed. ;-)
Last updated: Apr 12 2022 at 19:14 UTC
