Stream: genomics/committers
Topic: ValueSets for LOINC answer lists?
Kevin Power (Jun 24 2019 at 14:18):
We get lots of warnings like this:
*Bundle/CG-IG-HLA-FullBundle-01: Bundle.entry[10].resource.method
warning
ValueSet http://loinc.org/vs/LL4050-2 not found*
When we define the bindings for the LOINC answer lists, do we need to create our own local ValueSet for the LOINC answer lists? The URL above does resolve to a LOINC hosted server that returns a ValueSet, but I am not sure the validator knows how to pull it down, or its because it needs a username/password, or its because we have the LOINC url in the wrong place in the bindings tab of the spreadsheet? Anyone have any thoughts?
@Lloyd McKenzie @Patrick Werner
Lloyd McKenzie (Jun 24 2019 at 16:11):
Those URLs are supposed to work. @Grahame Grieve?
Grahame Grieve (Jun 24 2019 at 20:41):
yes. make an issue report against the publisher
Kevin Power (Jun 24 2019 at 23:09):
GF#22757 - Thanks
Patrick Werner (Jun 25 2019 at 07:46):
already mentioned it here: https://chat.fhir.org/#narrow/stream/179166-implementers/topic/java.20validator.20bugs.3F/near/168394513
Kevin Power (Jun 25 2019 at 15:19):
That looks like a different error?
Patrick Werner (Jun 25 2019 at 15:34):
you are right c&p error. this was the correct thread: https://chat.fhir.org/#narrow/stream/179166-implementers/topic/java.20validator.20.26.20LOINC.20Answerlists
Jamie Jones (May 14 2020 at 15:50):
these look totally fixed now! (searching for loinc in our qa returns none)
Kevin Power (May 14 2020 at 15:54):
Any idea why we are getting this message in the QA?
Bundle.entry[1].resource.ofType(Specimen).type.coding[0]: Unable to provide support for code system http://snomed.info/sct version http://snomed.info/sct/900000000000207008900000000000207008 for "http://snomed.info/sct#122555007"
Bret H (May 14 2020 at 18:02):
would a redirect at snomed.info be a culprit? Seems the base url is redirecting at the moment to covid stuff
Patrick Werner (May 14 2020 at 18:17):
Kevin Power said:
Any idea why we are getting this message in the QA?
Bundle.entry[1].resource.ofType(Specimen).type.coding[0]: Unable to provide support for code system http://snomed.info/sct version http://snomed.info/sct/900000000000207008900000000000207008 for "http://snomed.info/sct#122555007"
something is messed up with the snomed ct validation. I can't see a declaration of the sct version in our ig.
Kevin Power (May 14 2020 at 18:18):
Where do we do that?
Patrick Werner (May 14 2020 at 18:21):
can't find it so i think the ig creator is assuming a sct version, but the tx server doesn't know that version
Kevin Power (May 14 2020 at 18:26):
So you are saying our IG must declare what sct version must be used? Do we need to do that for all code systems?
Patrick Werner (May 14 2020 at 18:27):
no normally latest is assumed.
Kevin Power (May 14 2020 at 18:28):
OK, that code does seem to be in the latest - hence my confusion as to the "info" message in our QA.
Last updated: Apr 12 2022 at 19:14 UTC
