FHIR Chat · type being generated twice twice · IG creation

Stream: IG creation

Topic: type being generated twice twice

view this post on Zulip Eric Haas (Feb 27 2018 at 05:19):

The Spreadsheet parser is generating two two types. e.g.,

 <element id="Observation.category">
      <path value="Observation.category"/>
      <min value="1"/>
      <max value="1"/>
      <type>
        <code value="CodeableConcept"/>
      </type>
      <type>
        <code value="CodeableConcept"/>
      </type>
      <mustSupport value="false"/>
      <isModifier value="false"/>
    </element>
    <element id="Observation.category.coding">
      <path value="Observation.category.coding"/>
      <min value="1"/>
      <max value="1"/>
      <type>
        <code value="Coding"/>
      </type>
      <type>
        <code value="Coding"/>
      </type>
      <mustSupport value="false"/>
      <isModifier value="false"/>
    </element>

view this post on Zulip Eric Haas (Feb 27 2018 at 05:20):

Good news is the validator is complaining about this.

view this post on Zulip Grahame Grieve (Mar 19 2018 at 18:13):

sorry I missed this. I think I'll need to fix it

view this post on Zulip Grahame Grieve (Mar 19 2018 at 18:23):

does this happen for the current us-core?

view this post on Zulip Grahame Grieve (Mar 19 2018 at 18:23):

as in, what is committed now?

view this post on Zulip Eric Haas (Mar 19 2018 at 21:06):

nope

view this post on Zulip Grahame Grieve (Mar 19 2018 at 22:55):

Is there any easy way for me to reproduce?

view this post on Zulip Eric Haas (Mar 20 2018 at 01:18):

I can't get SD to even generate to show you with the latest ig-pub here is the error:

Initialization complete                                                          (21.0355sec)
Load Content                                                                     (21.0355sec)
load /Users/ehaas/Documents/FHIR/IG-Template2/source/resources/template-profile-spreadsheet.xml (21.0691sec)
Exception in thread "main" java.lang.Error: Not the right type for ElementDefinition.binding.valueSet[x]: Reference
    at org.hl7.fhir.r4.model.ElementDefinition$ElementDefinitionBindingComponent.setValueSet(ElementDefinition.java:3466)
    at org.hl7.fhir.igtools.spreadsheets.IgSpreadsheetParser.readBindings(IgSpreadsheetParser.java:497)
    at org.hl7.fhir.igtools.spreadsheets.IgSpreadsheetParser.loadBindings(IgSpreadsheetParser.java:431)
    at org.hl7.fhir.igtools.spreadsheets.IgSpreadsheetParser.parse(IgSpreadsheetParser.java:165)
    at org.hl7.fhir.igtools.publisher.Publisher.loadSpreadsheet(Publisher.java:1604)
    at org.hl7.fhir.igtools.publisher.Publisher.loadSpreadsheets(Publisher.java:1589)
    at org.hl7.fhir.igtools.publisher.Publisher.load(Publisher.java:1362)
    at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:380)
    at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:354)
    at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:4152)

view this post on Zulip Eric Haas (Mar 20 2018 at 01:20):

The above error is when I try to use a spreadsheet, I am able to run US-Core as xml files. But not able to use the definitions file that it generates. here is the error when I try to use the latest definitions file from US-Core...

view this post on Zulip Eric Haas (Mar 20 2018 at 01:24):

Local Validation Pack from cache location /Users/ehaas/Documents/FHIR/IG-Template2/generated_output/txCache/validation-3.0.1.zip using version 3.0.1 (00.0443sec)
Definitions 3.0.1-11917                                                          (18.0748sec)
Load Terminology Cache from /Users/ehaas/Documents/FHIR/IG-Template2/generated_output/txCache (18.0754sec)
Connect to Terminology Server at http://tx.fhir.org/r4                           (18.0757sec)
Load uscore (http://build.fhir.org/ig/HL7/US-Core/) from dependencies/uscore     (20.0699sec)
Exception in thread "main" java.lang.Error: Not the right type for ElementDefinition.binding.valueSet[x]: Reference
    at org.hl7.fhir.r4.model.ElementDefinition$ElementDefinitionBindingComponent.setValueSet(ElementDefinition.java:3466)
    at org.hl7.fhir.r4.formats.JsonParser.parseElementDefinitionElementDefinitionBindingComponentProperties(JsonParser.java:1739)
    at org.hl7.fhir.r4.formats.JsonParser.parseElementDefinitionElementDefinitionBindingComponent(JsonParser.java:1723)
    at org.hl7.fhir.r4.formats.JsonParser.parseElementDefinitionProperties(JsonParser.java:1526)
    at org.hl7.fhir.r4.formats.JsonParser.parseElementDefinition(JsonParser.java:1363)
    at org.hl7.fhir.r4.formats.JsonParser.parseStructureDefinitionStructureDefinitionSnapshotComponentProperties(JsonParser.java:20735)
    at org.hl7.fhir.r4.formats.JsonParser.parseStructureDefinitionStructureDefinitionSnapshotComponent(JsonParser.java:20726)
    at org.hl7.fhir.r4.formats.JsonParser.parseStructureDefinitionProperties(JsonParser.java:20675)
    at org.hl7.fhir.r4.formats.JsonParser.parseStructureDefinition(JsonParser.java:20543)
    at org.hl7.fhir.r4.formats.JsonParser.parseResource(JsonParser.java:24564)
    at org.hl7.fhir.r4.formats.JsonParserBase.parse(JsonParserBase.java:90)
    at org.hl7.fhir.igtools.publisher.Publisher.loadIg(Publisher.java:1151)
    at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:869)
    at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:352)
    at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:4152)

view this post on Zulip Grahame Grieve (Mar 20 2018 at 01:32):

hmm. let me look into that

view this post on Zulip Eric Haas (Mar 20 2018 at 01:34):

The prior ig-pub generated a definitions.file that I was able to use.

view this post on Zulip Grahame Grieve (Mar 20 2018 at 01:34):

hm.. how are you running that?

view this post on Zulip Eric Haas (Mar 20 2018 at 01:35):

and I'm not married to spreadsheets anymore so isn't a big deal if they are dead.

view this post on Zulip Grahame Grieve (Mar 20 2018 at 01:36):

I think Lloyd still is

view this post on Zulip Eric Haas (Mar 20 2018 at 01:36):

converted the spreadsheets to xml and ran it.

view this post on Zulip Eric Haas (Mar 20 2018 at 01:36):

for the last version of ig-pub

view this post on Zulip Grahame Grieve (Mar 20 2018 at 01:44):

so I just updated from github and built - and it builds ok

view this post on Zulip Eric Haas (Mar 20 2018 at 01:49):

What builds OK? US-Core?

view this post on Zulip Grahame Grieve (Mar 20 2018 at 01:49):

yes.

view this post on Zulip Eric Haas (Mar 20 2018 at 01:51):

can you send me a defnitions file?

view this post on Zulip Grahame Grieve (Mar 20 2018 at 01:52):

Fetch Validation Pack from http://hl7.org/fhir/STU3/igpack.zip (00.0382sec)

view this post on Zulip Grahame Grieve (Mar 20 2018 at 01:52):

that's where it's loading from

view this post on Zulip Eric Haas (Mar 20 2018 at 01:52):

the US Core defintions file from your ig-build

view this post on Zulip Grahame Grieve (Mar 20 2018 at 01:54):

umm?

view this post on Zulip Eric Haas (Mar 20 2018 at 01:55):

And the SD files in the build had a single type for each element?

view this post on Zulip Grahame Grieve (Mar 20 2018 at 01:55):

don't know. I just built of what's current.

view this post on Zulip Grahame Grieve (Mar 20 2018 at 01:56):

where would look to be sure it's not generating duplicate types?

view this post on Zulip Eric Haas (Mar 20 2018 at 01:57):

The Git repo is spreadsheets and when I ran the ig-pub the generated SD had two types for each element. Should show up in qa.html if it does.

view this post on Zulip Eric Haas (Mar 20 2018 at 02:00):

I am signing off for now will look more into it tomorrow.

view this post on Zulip Grahame Grieve (Mar 20 2018 at 03:00):

ok I think i fixed that...

view this post on Zulip Grahame Grieve (Mar 20 2018 at 03:30):

no. grrr

view this post on Zulip Grahame Grieve (Mar 20 2018 at 12:32):

now really fixed!

Last updated: Apr 12 2022 at 19:14 UTC


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