FHIR Chat · Socket timeout validating value set code batch

Stream: IG creation

Topic: Socket timeout validating value set code batch

Jean Duteau (Jan 07 2021 at 18:55):

I am getting a HTTP socket timeout error when running my guide and it appears to be when it's validating a set of codes in a value set when generating a narrative:

Generating Narratives                                                            (00:29.0858)
Publishing Content Failed: An error occurred trying to process this transaction request (01:00.0945)
                                                                                 (01:00.0946)
Use -? to get command line help                                                  (01:00.0947)
                                                                                 (01:00.0948)
Stack Dump (for debugging):                                                      (01:00.0950)
org.hl7.fhir.r5.utils.client.EFhirClientException: An error occurred trying to process this transaction request
    at org.hl7.fhir.r5.utils.client.FHIRToolingClient.handleException(FHIRToolingClient.java:325)
    at org.hl7.fhir.r5.utils.client.FHIRToolingClient.transaction(FHIRToolingClient.java:296)
    at org.hl7.fhir.convertors.txClient.TerminologyClientR5.validateBatch(TerminologyClientR5.java:120)
    at org.hl7.fhir.r5.context.BaseWorkerContext.validateCodeBatch(BaseWorkerContext.java:820)
    at org.hl7.fhir.r5.renderers.ValueSetRenderer.getConceptsForCodes(ValueSetRenderer.java:1001)
    at org.hl7.fhir.r5.renderers.ValueSetRenderer.genInclude(ValueSetRenderer.java:825)
    at org.hl7.fhir.r5.renderers.ValueSetRenderer.generateComposition(ValueSetRenderer.java:754)
    at org.hl7.fhir.r5.renderers.ValueSetRenderer.render(ValueSetRenderer.java:84)
    at org.hl7.fhir.r5.renderers.ValueSetRenderer.render(ValueSetRenderer.java:73)
    at org.hl7.fhir.r5.renderers.ResourceRenderer.render(ResourceRenderer.java:74)
    at org.hl7.fhir.igtools.publisher.Publisher.generateNarratives(Publisher.java:1135)
    at org.hl7.fhir.igtools.publisher.Publisher.loadConformance(Publisher.java:3826)
    at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:877)
    at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:732)
    at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:8414)
Caused by: java.net.SocketTimeoutException: timeout
    at okio.Okio$4.newTimeoutException(Okio.java:230)
    at okio.AsyncTimeout.exit(AsyncTimeout.java:285)
    at okio.AsyncTimeout$2.read(AsyncTimeout.java:241)
    at okio.RealBufferedSource.indexOf(RealBufferedSource.java:345)
    at okio.RealBufferedSource.readUtf8LineStrict(RealBufferedSource.java:217)
    at okio.RealBufferedSource.readUtf8LineStrict(RealBufferedSource.java:211)
    at okhttp3.internal.http1.Http1Codec.readResponseHeaders(Http1Codec.java:189)
    at okhttp3.internal.http.CallServerInterceptor.intercept(CallServerInterceptor.java:75)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
    at okhttp3.internal.connection.ConnectInterceptor.intercept(ConnectInterceptor.java:45)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
    at okhttp3.internal.cache.CacheInterceptor.intercept(CacheInterceptor.java:93)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
    at okhttp3.internal.http.BridgeInterceptor.intercept(BridgeInterceptor.java:93)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
    at okhttp3.internal.http.RetryAndFollowUpInterceptor.intercept(RetryAndFollowUpInterceptor.java:120)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
    at org.hl7.fhir.r5.utils.client.network.RetryInterceptor.intercept(RetryInterceptor.java:60)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:92)
    at okhttp3.internal.http.RealInterceptorChain.proceed(RealInterceptorChain.java:67)
    at okhttp3.RealCall.getResponseWithInterceptorChain(RealCall.java:185)
    at okhttp3.RealCall.execute(RealCall.java:69)
    at org.hl7.fhir.r5.utils.client.network.FhirRequestBuilder.executeAsBatch(FhirRequestBuilder.java:214)
    at org.hl7.fhir.r5.utils.client.network.Client.executeBundleRequest(Client.java:197)
    at org.hl7.fhir.r5.utils.client.network.Client.postBatchRequest(Client.java:181)
    at org.hl7.fhir.r5.utils.client.FHIRToolingClient.transaction(FHIRToolingClient.java:294)
    ... 13 more
Caused by: java.net.SocketTimeoutException: Read timed out
    at java.base/java.net.SocketInputStream.socketRead0(Native Method)
    at java.base/java.net.SocketInputStream.socketRead(SocketInputStream.java:115)
    at java.base/java.net.SocketInputStream.read(SocketInputStream.java:168)
    at java.base/java.net.SocketInputStream.read(SocketInputStream.java:140)
    at okio.Okio$2.read(Okio.java:139)
    at okio.AsyncTimeout$2.read(AsyncTimeout.java:237)
    ... 39 more

I tried looking for a log file to see what it was failing on or if there was more information about the error but couldn't find anything.

Grahame Grieve (Jan 07 2021 at 20:00):

how long is it waiting?

Jean Duteau (Jan 07 2021 at 20:06):

in this latest run, it seemed to get one step further but it was 19 seconds from validating to failure:

Generating Narratives                                                            (00:42.0453)
Validating Conformance Resources                                                 (01:00.0300)
Publishing Content Failed: An error occurred trying to process this transaction request (01:19.0431)
                                                                                 (01:19.0432)