Stream: IG creation
Topic: R4 IG Build Errors
Eric Haas (Oct 24 2018 at 15:34):
my diagnosticreport examples are failing in the latest ig-pub
e.g..urinalysis json example passes $validate and even tried as xml example whichpasses r4 schema.
Stack Dump (for debugging): (00:01:14.0423sec)
java.lang.Exception: Unable to determine type for /Users/ehaas/Documents/FHIR/US-Core-R4/source/examples/urinalysis: com.google.gson.JsonArray cannot be cast to com.google.gson.JsonObject
at org.hl7.fhir.igtools.publisher.Publisher.loadAsElementModel(Publisher.java:2394)
at org.hl7.fhir.igtools.publisher.Publisher.load(Publisher.java:1778)
at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:582)
at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:526)
at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:4925)
Caused by: java.lang.ClassCastException: com.google.gson.JsonArray cannot be cast to com.google.gson.JsonObject
at com.google.gson.JsonObject.getAsJsonObject(JsonObject.java:182)
at org.hl7.fhir.r4.formats.JsonParser.parseDiagnosticReportProperties(JsonParser.java:9539)
at org.hl7.fhir.r4.formats.JsonParser.parseDiagnosticReport(JsonParser.java:9516)
at org.hl7.fhir.r4.formats.JsonParser.parseResource(JsonParser.java:27504)
at org.hl7.fhir.r4.formats.JsonParserBase.parse(JsonParserBase.java:92)
at org.hl7.fhir.r4.formats.ParserBase.parse(ParserBase.java:58)
at org.hl7.fhir.r4.elementmodel.ObjectConverter.convert(ObjectConverter.java:90)
at org.hl7.fhir.igtools.publisher.Publisher.loadAsElementModel(Publisher.java:2387)
... 4 more
Exception in thread "main" java.lang.NullPointerException
at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:4935)
Erics-Air-2:US-Core-R4 ehaas$
I know that I've recently updated category to 0..* but that is not the issue.
Can see the examples from the last good build here... http://build.fhir.org/ig/HL7/US-Core-R4/
Lloyd McKenzie (Oct 25 2018 at 03:48):
I've seen this before. I think it was fixed by wiping the temp and output folders, but don't remember for sure...
Kevin Power (Oct 25 2018 at 16:52):
@Eric Haas @Lloyd McKenzie I am seeing this same error. Locally I tried Lloyds suggestion of wiping temp and output, but still fails. Also fails with the same error http://build.fhir.org/ig/HL7/genomics-reporting/build.log
Lloyd McKenzie (Oct 25 2018 at 16:57):
Ok. This might be a substantive change to DiagnosticReport that requires @Grahame Grieve to update the code again :(
Kevin Power (Oct 25 2018 at 18:27):
For now, I just took out DiagnosticReport.category from our examples and it builds OK. Not a great long term fix but OK for now.
Eric Haas (Oct 25 2018 at 18:39):
I have done the same ( removed the example for now) .. I have not tried a DR from the build however - in case my examples are incorrect. FYI DR has several pending changes including .context 0.1 --> .encounter 0..*
Lloyd McKenzie (Oct 25 2018 at 20:25):
I think you meant context 0..* -> encounter 0..1? (Shouldn't be part of multiple encounters...)
Eric Haas (Oct 25 2018 at 20:32):
yes
Eric Haas (Oct 29 2018 at 21:01):
Also finding:
Eric Haas (Oct 29 2018 at 21:01):
10/29/2018 build notes:
HealthCareService examples not working
fixed example to pass latest R4 schema
updated ig-publisher
commented out eligibility as workaround
Stack Dump (for debugging): (38.0855sec)
java.lang.Exception: Unable to determine type for /Users/ehaas/Documents/FHIR/VhDir/source/examples/healthcareservice-example-independencerehab1: com.google.gson.JsonArray cannot be cast to com.google.gson.JsonObject
at org.hl7.fhir.igtools.publisher.Publisher.loadAsElementModel(Publisher.java:2394)
at org.hl7.fhir.igtools.publisher.Publisher.load(Publisher.java:1778)
at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:582)
at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:526)
at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:4925)
Caused by: java.lang.ClassCastException: com.google.gson.JsonArray cannot be cast to com.google.gson.JsonObject
at com.google.gson.JsonObject.getAsJsonObject(JsonObject.java:182)
at org.hl7.fhir.r4.formats.JsonParser.parseHealthcareServiceProperties(JsonParser.java:13100)
at org.hl7.fhir.r4.formats.JsonParser.parseHealthcareService(JsonParser.java:13025)
at org.hl7.fhir.r4.formats.JsonParser.parseResource(JsonParser.java:27544)
at org.hl7.fhir.r4.formats.JsonParserBase.parse(JsonParserBase.java:92)
at org.hl7.fhir.r4.formats.ParserBase.parse(ParserBase.java:58)
at org.hl7.fhir.r4.elementmodel.ObjectConverter.convert(ObjectConverter.java:90)
at org.hl7.fhir.igtools.publisher.Publisher.loadAsElementModel(Publisher.java:2387)
... 4 more
Exception in thread "main" java.lang.NullPointerException
at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:4935)
Brian Postlethwaite (Oct 30 2018 at 08:16):
Is that for the VhDir Eric?
Brian Postlethwaite (Oct 30 2018 at 08:17):
I would leave it a bit, as I'm about to put in the other core changes for it too.
Eric Haas (Oct 30 2018 at 15:12):
Ye, but it is not a big deal - I have it up and running updating with ballot comments and logged these build issues on GitHub so can keep track.
Brian Postlethwaite (Oct 30 2018 at 15:18):
I'm looking forward to getting that guide up and running in a few days once the dust clears from R4 core
Grahame Grieve (Nov 09 2018 at 06:13):
is this still a problem?
Eric Haas (Nov 09 2018 at 12:24):
I am still getting errors with DiagnosticReport examples in R4. The issue arrises in US-Core R4. The example files are parked in the 'draft resources' folder.
Last updated: Apr 12 2022 at 19:14 UTC
