FHIR Chat · Build fails installing USCoreR4

Stream: IG creation

Topic: Build fails installing USCoreR4

David Pyke (Jun 13 2019 at 21:00):

My local works but the build server fails with the following:
Installing hl7.fhir.us.core.r4#current to the package cache
Fetching:Publishing Content Failed: null (34.0172sec)
(34.0172sec)
Use -? to get command line help (34.0172sec)
(34.0172sec)
Stack Dump (for debugging): (34.0172sec)
java.lang.NullPointerException
at java.base/java.io.FilterInputStream.markSupported(FilterInputStream.java:242)
at org.apache.commons.compress.compressors.gzip.GzipCompressorInputStream.<init>(GzipCompressorInputStream.java:160)
at org.apache.commons.compress.compressors.gzip.GzipCompressorInputStream.<init>(GzipCompressorInputStream.java:131)
at org.hl7.fhir.utilities.cache.PackageCacheManager.unPackage(PackageCacheManager.java:414)
at org.hl7.fhir.utilities.cache.PackageCacheManager.addPackageToCache(PackageCacheManager.java:348)
at org.hl7.fhir.utilities.cache.PackageCacheManager.loadPackage(PackageCacheManager.java:607)
at org.hl7.fhir.igtools.publisher.Publisher.resolveDependency(Publisher.java:2183)
at org.hl7.fhir.igtools.publisher.Publisher.loadIg(Publisher.java:2152)
at org.hl7.fhir.igtools.publisher.Publisher.initializeFromJson(Publisher.java:1667)
at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:1117)
at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:601)
at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:6101)
Exception in thread "main" java.lang.NullPointerException
at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:6111)
Do I need to do anything about this?

Eric Haas (Jun 13 2019 at 21:50):

It is being published and I realized the npm name still had r4 in it - it is now hl7.fhir.us.core.#current

David Pyke (Jun 14 2019 at 00:20):

Quit breaking things!

Eric Haas (Jun 14 2019 at 02:55):

it had to be done...

Rick Geimer (Jun 18 2019 at 02:55):

@Eric Haas Are you still making changes today? One of my IGs was running error free a couple hours ago, but now has dozens of US Core related errors. There is a Da Vinci ballot deadline tonight, so changes today are very problematic.

Rick Geimer (Jun 18 2019 at 03:04):

Or perhaps the terminology server is down? @Grahame Grieve
The IG publisher can't seem to resolve http://hl7.org/fhir/us/core/CodeSystem/us-core-documentreference-category

Grahame Grieve (Jun 18 2019 at 03:05):

which IG is this?

Rick Geimer (Jun 18 2019 at 03:16):

CDex. Actually I think it is that dependsOn.uri issue again. Getting this error:

ImplementationGuide/davinci-cdex: ImplementationGuide.dependsOn[2].uri
error
URL value 'http://hl7.org/fhir/us/core/ImplementationGuide/hl7.fhir.us.core-3.0.0' does not resolve

Rick Geimer (Jun 18 2019 at 03:17):

That's the cannonical URL from the US Core R4 ImplementationGuide resource. That bug was fixed, now seems to be broken again. @Grahame Grieve

Grahame Grieve (Jun 18 2019 at 03:18):

use the package not the canonical URL

Rick Geimer (Jun 18 2019 at 03:19):

The spec says it is the cannonical URL. We discussed this last week.
http://hl7.org/fhir/implementationguide-definitions.html#ImplementationGuide.dependsOn.uri

Rick Geimer (Jun 18 2019 at 03:20):

You fixed it, now it seems to be unfixed.

Grahame Grieve (Jun 18 2019 at 03:21):

if you want to use the canonical just use 'http://hl7.org/fhir/us/core

Rick Geimer (Jun 18 2019 at 03:21):

Doesn't work. We store the ImplementationGuide resource in HAPI, and it will only accept the cannonical URL.

Grahame Grieve (Jun 18 2019 at 03:22):

well, that's an impasse

Rick Geimer (Jun 18 2019 at 03:23):

Yeah. It's not valid per the spec. Are we saying every resource but ImplementationGuide needs to follow the rules?

Rick Geimer (Jun 18 2019 at 03:25):

For tonight I can just hack the raw XML and commit to github, but we need a long term fix.

Rick Geimer (Jun 18 2019 at 03:26):

Maybe the IG publisher should accept both the package and the cannonical URL until R5, when hopefully we either remove dependsOn.uri or state that it should be the package id?

Eric Haas (Jun 18 2019 at 03:44):

I have not touched us core since last week when I updated the package-list.json for publishing.

Rick Geimer (Jun 18 2019 at 03:47):

Yeah, sorry Eric, false alarm. Is an IG publisher dependency issue, not anything you did.

Eric Haas (Jun 18 2019 at 03:48):

here is the ig.xml url :
<url value="http://hl7.org/fhir/us/core/ImplementationGuide/hl7.fhir.us.core-3.0.0"/>

Eric Haas (Jun 18 2019 at 03:48):

Rick Geimer (Jun 18 2019 at 03:50):

Yes, that's what I am using, but the publisher can't resolve the dependency if you use the actual cannonical URL in ImplementationGuide.dependsOn.uri. It seems to expect it to be the package id or absent, but the spec says the uri is required (1..1) and must be the full cannonical URL of an ImplementationGuide resource.

Grahame Grieve (Jun 18 2019 at 04:15):

which IG is this?

Rick Geimer (Jun 18 2019 at 04:25):

Da Vinci CDex

Rick Geimer (Jun 18 2019 at 04:26):

build.fhir.org/ig/HL7/davinci-ecdx

Rick Geimer (Jun 18 2019 at 04:26):

For now I have manually hacked the IG resource to have a package id in ImplementationGuide.dependsOn.uri so that it builds.

Rick Geimer (Jun 18 2019 at 04:27):

Also getting an error due to the https://cts.nlm.nih.gov/fhir/ValueSet/YOUR-FAVORITE-OID issue, but I will let Melva know that that is a known issue per our discussion last Wednesday at Dev Days.