FHIR Chat · zip · bulk data

Stream: bulk data

Topic: zip


view this post on Zulip Brian Kolowitz (Aug 30 2019 at 11:24):

we have a client that would like the bulk data zipped. would it re reasonable for my server to support _outputFormat=application/zip and return a .zip file or should i write a small app that consumes the .ndjson from the server and packages it for the client?

view this post on Zulip Jeffrey Taylor (Aug 30 2019 at 12:51):

I like the idea of a the application/zip value for _outputFormat.

An alternative could be a request that looks something like:
/Patient/$export?_type=DocumentManifest&_typeFilter =.... This would result in an .ndjson file containing 1 document manifest that has 1 Attachment that contains a url pointing to the zip file.

I think Brian's approach is simpler, but it'd be helpful to think and discuss alternatives to fulfill this use case.

view this post on Zulip Brian Kolowitz (Aug 30 2019 at 12:53):

@Jeffrey Taylor I like your suggestion, my question regards how do we specify that the DocumentManifest contains a zip as opposed to a pointer to the ndjson

view this post on Zulip Jenni Syed (Aug 30 2019 at 14:27):

I thought we did this at a connectathon using standard HTTP headers... let me look

view this post on Zulip Jenni Syed (Aug 30 2019 at 14:27):

Accept-Encoding

view this post on Zulip Jenni Syed (Aug 30 2019 at 14:28):

Because if you replaced the output format, you wouldn't know what was in the zip (fhir JSON, ND JSON, etc)

view this post on Zulip Jenni Syed (Aug 30 2019 at 14:28):

I could be remembering incorrectly

view this post on Zulip Josh Mandel (Aug 30 2019 at 14:29):

Our experience in connectathon led us to encourage/prefer clients to request encodings, as Jenni says here. This way we re-use all the content type negotiations.

view this post on Zulip Josh Mandel (Aug 30 2019 at 14:30):

It doesn't quite give you "a zip" at the end of the process, but it allows a client to limit bandwidth required, and the client can pipe the file to a zip or whatever its compressed format of choice might be.

view this post on Zulip Brian Kolowitz (Aug 30 2019 at 14:31):

I'm considering returning an ndjson with a single row containing a documentmanifest that contains a link to a zip file... not sure if that makes sense

view this post on Zulip Josh Mandel (Aug 30 2019 at 14:39):

I don't think it makes a ton of sense. That is to say: you'd seem to lose most of the API capabilities and you wouldn't get much in the way of interop.

view this post on Zulip Brian Kolowitz (Aug 30 2019 at 14:44):

@Josh Mandel thanks for the gut check.

view this post on Zulip Grahame Grieve (Aug 31 2019 at 13:11):

zip is tricky because it's both a compression and a folder format.


Last updated: Apr 12 2022 at 19:14 UTC