FHIR Chat · May 2019 Connectathon · bulk data

Stream: bulk data

Topic: May 2019 Connectathon

Josh Mandel (May 04 2019 at 02:11):

Looking forward to seeing folks in Montreal tomorrow! I've set up a shared doc for details about who's coming. Please

• Add yourself to the participant list, and share 1-3 (brief!) things you're aiming to try at the connectathon
• Add information about any resources you think the group should know about
• Add your servers, clients, or analytics platforms to the relevant lists; please include any information about how others can connect, if these are open/shared resources, and briefly list capabilities

Josh Mandel (May 04 2019 at 13:14):

After the big-group orientation, we'll head out into the hall for intros / planning!

Brian Postlethwaite (May 04 2019 at 13:22):

Which room?

Josh Mandel (May 04 2019 at 13:24):

I was thinking... hallway ;-)

Josh Mandel (May 04 2019 at 13:27):

(We'll do the "lightweight" thing and just use docs instead of conman to collaborate.)

Mohammad Jafari (May 04 2019 at 16:06):

• Is anyone with a client interested in getting together to test it against my bulk export server?
• Is anyone with a node.js client interested in getting together to test against my auth-protected server? (I have a request-promise-friendly client which handles the auth parts transparently).
• Is anyone with a bulk export server interested in getting together to test my auth proxy against their bulk export server?
• Is anyone with a publicly available FHIR server interested in getting together to test my bulk export proxy with their FHIR backend?

I'm also interested in having a chat about the following topics:
- privacy, authorization, and redaction for bulk export.
- _typeFilter parameter and its role in enforcing redaction polices in export.
- general conversation about the Bulk API design.

Please DM me to get together in the overflow space since I didn't get a spot at the BDT table and had to sit somewhere else :slight_smile:

Michael Hansen (May 04 2019 at 20:05):

Is there are Googler, who can provide me with the ndjson export from the Google FHIR API so that we can try to import it into another server.

Nik Klassen (May 04 2019 at 20:06):

I can get that for you

Michael Hansen (May 04 2019 at 20:07):

@Jack Liu can start the import into our server and see if we can get it in.

Nik Klassen (May 04 2019 at 20:12):

Actually the data on https://console.cloud.google.com/storage/browser/gcp-fhir-demo-dataset-synthea/stu3-small-cleaned/ is from our export operation, so if you can import that then you're good

Michael Hansen (May 04 2019 at 20:12):

I thought those data were generated with synthea and were never in the Google FHIR API?

Nik Klassen (May 04 2019 at 20:17):

You're right, I was mistaken, I attached an example of a file I exported. You should find the format the same as the Synthea data (ndjson) though export_1557000431328434_AllergyIntolerance-4

Michael Hansen (May 04 2019 at 20:34):

Cool, could you add the Patient.ndjson too, so that we can validate a search afterwards.

Nik Klassen (May 04 2019 at 20:35):

Sure export_1557000431328434_Patient

Michael Hansen (May 04 2019 at 20:49):

Imported:

GET https://jackliu-ip3.azurewebsites.net/AllergyIntolerance?_summary=count

{
    "resourceType": "Bundle",
    "id": "b8ea52af-9d9a-471f-abc6-068549c3e650",
    "type": "searchset",
    "total": 42
}

GET https://jackliu-ip3.azurewebsites.net/Patient?_summary=count

{
    "resourceType": "Bundle",
    "id": "d6c14c98-3c13-4279-900b-25ad876b17fd",
    "type": "searchset",
    "total": 130
}

Michael Hansen (May 04 2019 at 21:43):

OK, here are a few files exported from the Azure API for FHIR. Googlers, could try to import Encounter.json Patient.json Observation.json

Nik Klassen (May 05 2019 at 13:21):

No issue importing those files :+1:

Brian Postlethwaite (May 05 2019 at 13:34):

Found a bug on the normative http.html page in the spec GF#21282
The dotnet fhir client doesn't permit operations to return a 202.

Jenni Syed (May 05 2019 at 14:54):

FYI: I started a discussion about bulk data (and subscription) usage of the _since parameter here: https://chat.fhir.org/#narrow/stream/179166-implementers/topic/_since.20vs.20_lastUpdated

Michael Hansen (May 05 2019 at 15:34):

Nice, we have interoperability and we can all go home.

Michele Mottini (May 05 2019 at 16:22):

I won't be here in the afternoon, so what I did was: tested our client against @Mohammad Jafari server, successfully

Brian Postlethwaite (May 05 2019 at 17:17):

I should be in a position to test your client with our server locally, and hoping for a public server test too...

Richard Zhu (May 05 2019 at 17:34):

where is breakout session this afternoon 1:45p?

Dan Gottlieb (May 05 2019 at 17:36):

Salon 6

Jenni Syed (May 05 2019 at 17:45):

1:45? Or 2?

Jenni Syed (May 05 2019 at 17:45):

I think each of the breakouts is 1 hr

Jenni Syed (May 05 2019 at 17:45):

@Dan Gottlieb

Grahame Grieve (May 05 2019 at 17:47):

we kick the other guys out early ;-)

Grahame Grieve (May 05 2019 at 17:47):

so now....

Jenni Syed (May 05 2019 at 17:48):

haha. Ok, thanks!

Last updated: Apr 12 2022 at 19:14 UTC