Stream: Cancer Interoperability
Topic: NAACCR (and i2b2, PCORNet, OMOP)
Dan Connolly (Jun 12 2019 at 18:32):
I'm new to FHIR, but I've worked in a bunch of cancer research projects based on cancer registry data in i2b2 ( https://informatics.gpcnetwork.org/trac/Project/wiki/NAACCR_ETL ). Anybody doing NAACCR stuff in this FHIR world?
Our shop also does PCORNet CDM ( https://github.com/kumc-bmi/i2p-transform ). And I'd really like to do OMOP. (we have applied for funding to do OMOP / FHIR work).
Dan Connolly (Jun 12 2019 at 22:10):
ah... http://build.fhir.org/ig/HL7/us-breastcancer/modeling.html
Robinette Renner (Jun 13 2019 at 13:14):
The Common Data Model Harmonization Implementation Guide may be of interest. It provides mappings of i2b2, Sentinel, PCORNet, and OMOP to FHIR.
http://hl7.org/fhir/us/cdmh/2019May/profiles.html
Dan Connolly (Jun 13 2019 at 14:49):
Thanks for the pointer. The mapping of lab_name cfrom pcornet looks goofy. It's supposed to be a1c or the like, not Quest.
Patrick Werner (Jun 13 2019 at 15:28):
There is the clinical genomics IG for everything genomics related:
http://build.fhir.org/ig/HL7/genomics-reporting/
Last updated: Apr 12 2022 at 19:14 UTC
