Stream: python
Topic: fhir.resources R4, STU3, DSTU2
Md Nazrul Islam (Jul 05 2020 at 15:59):
Revolutionary evolution of #fhir.resources,
So excited to announce the first beta release of
https://lnkd.in/ga5k5q2
#rewritten in modern python, powered by #pydantic, faster than ever.
Md Nazrul Islam (Sep 24 2020 at 19:14):
Happy to announce the new release of fhir.resources which is now supporting orjson (super fast) and also bug fixes.
Md Nazrul Islam (Dec 17 2020 at 09:14):
Happy to announce that finally a stable version of the "fhir.resources" has been released! Thanks :pray: to all contributors for their hard workings, and also those, who did bugs reports.
:fire::fire:Enjoy the revolutionary evolution.:fire::fire: https://pypi.org/project/fhir.resources/6.0.0/
Eric Haas (Dec 17 2020 at 16:30):
does your model support primitive extensions like this one (would be nice to support YAML natively so the json comment thing become moot too ;-):
- id: Observation.subject
path: Observation.subject
min: 1
max: '1'
type:
- code: Reference
targetProfile:
- 'http://hl7.org/fhir/StructureDefinition/Patient'
- 'http://hl7.org/fhir/StructureDefinition/Group'
- 'http://hl7.org/fhir/StructureDefinition/Device'
- 'http://hl7.org/fhir/StructureDefinition/Location'
_targetProfile: #<<<<<<<<<<<<<< Primitive extension
- extension:
- url : http://hl7.org/fhir/StructureDefinition/type-must-support
valueBoolean: true
- url : http://hl7.org/fhir/StructureDefinition/type-must-support
valueBoolean: false
- url : http://hl7.org/fhir/StructureDefinition/type-must-support
valueBoolean: false
- url : http://hl7.org/fhir/StructureDefinition/type-must-support
valueBoolean: false
mustSupport: true
Md Nazrul Islam (Dec 17 2020 at 17:03):
Eric Haas said:
does your model support primitive extensions like this one (would be nice to support YAML natively so the json comment thing become moot too ;-):
- id: Observation.subject path: Observation.subject min: 1 max: '1' type: - code: Reference targetProfile: - 'http://hl7.org/fhir/StructureDefinition/Patient' - 'http://hl7.org/fhir/StructureDefinition/Group' - 'http://hl7.org/fhir/StructureDefinition/Device' - 'http://hl7.org/fhir/StructureDefinition/Location' _targetProfile: #<<<<<<<<<<<<<< Primitive extension - extension: - url : http://hl7.org/fhir/StructureDefinition/type-must-support valueBoolean: true - url : http://hl7.org/fhir/StructureDefinition/type-must-support valueBoolean: false - url : http://hl7.org/fhir/StructureDefinition/type-must-support valueBoolean: false - url : http://hl7.org/fhir/StructureDefinition/type-must-support valueBoolean: false mustSupport: true
Yes, primitive extensions are supported by default.
About native support to YMAL is a really good idea, Please add issue here https://github.com/nazrulworld/fhir.resources/issues/
Md Nazrul Islam (Mar 31 2021 at 06:25):
Super excited 🥳🥳 to announce the first beta release of fhir.resources, series 6.2.X.
Experimental features XML and YAML-based serializers/deserializers are included.
Meaning that you can export as YAML/XML string alongside JSON from any Resource Model! also reverse way from YAML string/file to Resource Model.
Your suggestions, bug reports are much appreciated 🙏🏽🙏🏽🙏🏽
https://pypi.org/project/fhir.resources/6.2.0b1/
Łukasz Kułakowski (Oct 15 2021 at 11:47):
Hello everyone,
Is fhir.resources library capable of accessing resource data in Fhirpath way? E.g. I'm trying to get Observation.category.coding data, where category is a list. Right now I can't access it just by stating var = Observation.category.coding, i need to take into account that category is a list object.
Eric Haas (Oct 18 2021 at 21:47):
no...access the list member pythonically...
Import from YAML file Observation template
from fhir.resources.observation import Observation
from fhir.resources import construct_fhir_element
obs_obj = Observation.parse_file("fhir_templates/Observation_a1c.yml")#"Observation_wt.yml")
#print(obs_obj.yaml())
print(obs_obj.category[0].coding)
[Coding(resource_type='Coding', fhir_comments=None, extension=None, id=None, id__ext=None, code='laboratory', code__ext=None, display='Laboratory', display__ext=None, system='http://terminology.hl7.org/CodeSystem/observation-category', system__ext=None, userSelected=None, userSelected__ext=None, version=None, version__ext=None)]
Eric Haas (Oct 18 2021 at 21:54):
check out https://pypi.org/project/fhirpath/
@Md Nazrul Islam can they be combined???
Md Nazrul Islam (Oct 21 2021 at 11:13):
Eric Haas said:
check out https://pypi.org/project/fhirpath/
Md Nazrul Islam can they be combined???
I think, in the case of fhirpath way, still need to consider the collection type. That means Observation.category.coding would not return from 0 the index automatically.
Md Nazrul Islam (Jan 01 2022 at 12:03):
Announcing the next-generation release of fhir.resources, check out new features. For example XML, YAML serialisation/deserialisation!
https://pypi.org/project/fhir.resources/6.2.0/
Eric Haas (Jan 03 2022 at 18:38):
thanks again for the YAML part.
May Terry (Jan 10 2022 at 22:55):
+1 with Eric's comment. I love the new YAML serialization feature. :smile:
Last updated: Apr 12 2022 at 19:14 UTC
