Stream: connectathon mgmt
Topic: Clinical Genomics Track
Patrick Werner (Jun 18 2018 at 18:41):
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Patrick Werner (Sep 28 2018 at 21:35):
Dear participants of the CG Connectathon Track, we will track the participants in this spreadsheet:
https://docs.google.com/spreadsheets/d/1ZgcdZ-iNEMFaztuND5EHSxyQP8M4GUbmKmEN6XzQtNU/edit#gid=1775022935
Testserver would be:
http://fhirtest.uhn.ca/home?serverId=home_r4&pretty=false
baseUrl: http://hapi.fhir.org/baseR4
Patrick Werner (Sep 28 2018 at 21:36):
As the Clinical Genomics IG currently needs more examples it would be nice to collect examples through the Connectathon. I'll post a link to a spreadsheet collecting the examples later.
Michael Donnelly (Sep 29 2018 at 12:47):
Jason from Epic had an emergency and won't be here for the weekend, but Epic's server is up and running.
Michael Donnelly (Sep 29 2018 at 12:47):
Patrick Werner (Sep 29 2018 at 13:15):
We just added an example report of somatic tumor mutations of a german genomic analysis service provider:
https://drive.google.com/drive/folders/18T4RS0VnrJdLS3k79skbrZ0cYyL1U53t
Patrick Werner (Sep 29 2018 at 13:21):
I've created a spreadsheet to capture all examples:
https://docs.google.com/spreadsheets/d/1mXVGk9fyqJTGfzLOcmsT27cFC-yHC_hXRK_FL775gQU/edit?usp=sharing
Kevin Power (Sep 29 2018 at 14:26):
CG track - we have setup a break-out session to discuss complex variation representations. We will meet at 5:00 PM (17:00) in the President room.
Joel Schneider (Sep 29 2018 at 19:16):
[cross-posted from Terminology Services connectathon track]
FYI, we (NMDP) are in the process of inventing a new code system for nomenclature-level HLA (and KIR) data. The main purpose of the new code system is to add a compositional grammar to established standard nomenclatures. These nomenclatures are important for transplantation scenarios, to describe donor and recipient tissue types. A (currently draft) web site describing the Genotype List String Code (GLSC) code system is here:
Review and comments on the code system and web site content/narrative would be appreciated.
Patrick Werner (Sep 30 2018 at 13:23):
As hapi (R4) is down currently we can use Grahames Server:
http://test.fhir.org/r4
Patrick Werner (Sep 30 2018 at 15:52):
added: GF18987 and added it in the current IG
Joel Schneider (Sep 30 2018 at 18:32):
Regarding the discussion about SMART sandbox and EHR simulator, this may be of interest. Looks like the new beta sandbox includes an EHR simulator.
https://sandbox-beta.hspconsortium.org/
Kevin Power (Jan 12 2019 at 14:49):
For anyone participating or interested in the Clinical Genomics Track, we will have conversations here
Last updated: Apr 12 2022 at 19:14 UTC
