Stream: terminology
Topic: Erroneous warning on ServiceDeliveryLocationRoleType ?
David Simons (Sep 14 2021 at 09:56):
Getting the below hl7validator 5.5.3 with tx.fhir.org warning :( despite the fact that http://terminology.hl7.org/ValueSet/v3-ServiceDeliveryLocationRoleTypeDOES contain RNEUand INLAB codes, via Include codes from http://terminology.hl7.org/CodeSystem/v3-RoleCode where concept descends from _ServiceDeliveryLocationRoleType...
Cannot find where this goes wrong...
2021-09-13T16:12:49.8232783Z -- ILSLocation.example.xml ----------------------------------------
2021-09-13T16:12:49.8233835Z Success: 0 errors, 2 warnings, 0 notes
2021-09-13T16:12:49.8238585Z Warning @ Location.contained[0].ofType(Location).type[0] (line 11, col13) : None of the codings provided are in the value set http://terminology.hl7.org/ValueSet/v3-ServiceDeliveryLocationRoleType (http://terminology.hl7.org/ValueSet/v3-ServiceDeliveryLocationRoleType), and a coding should come from this value set unless it has no suitable code (note that the validator cannot judge what is suitable) (codes = http://terminology.hl7.org/CodeSystem/v3-RoleCode#RNEU)
2021-09-13T16:12:49.8246944Z Warning @ Location.type[0] (line 30, col9) : None of the codings provided are in the value set http://terminology.hl7.org/ValueSet/v3-ServiceDeliveryLocationRoleType (http://terminology.hl7.org/ValueSet/v3-ServiceDeliveryLocationRoleType), and a coding should come from this value set unless it has no suitable code (note that the validator cannot judge what is suitable) (codes = http://terminology.hl7.org/CodeSystem/v3-RoleCode#INLAB)
Grahame Grieve (Sep 14 2021 at 10:33):
what's the actual terminology server API call?
David Simons (Sep 14 2021 at 10:35):
Grahame Grieve said:
what's the actual terminology server API call?
oh, then I would need to run a sniffer... ;) let me ask the team to see what we can dig up as additional logs
Grahame Grieve (Sep 14 2021 at 10:57):
I think the validator can log...
Grahame Grieve (Sep 14 2021 at 10:58):
-txLog filename see https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Validator#UsingtheFHIRValidator-Logging
David Simons (Sep 14 2021 at 11:07):
will do - it may be related to what I now find in the output:
2021-09-14T10:52:58.6954575Z Validate ILSLocation.example.xmltodo: handle concept filters with op = DESCENDENTOF
2021-09-14T10:52:59.8741197Z todo: handle concept filters with op = DESCENDENTOF
from http://terminology.hl7.org/ValueSet/v3-ServiceDeliveryLocationRoleType:
<compose>
<include>
<system value="http://terminology.hl7.org/CodeSystem/v3-RoleCode"/>
<filter>
<property value="concept"/>
<op value="descendent-of"/>
<value value="_ServiceDeliveryLocationRoleType"/>
</filter>
</include>
</compose>
Grahame Grieve (Sep 14 2021 at 11:16):
oh that will be it. I'll add that to my todo list. descendent-of was introduced after I wrote that code
David Simons (Sep 14 2021 at 11:25):
Thank you Graham - and this is one of those use cases where suppressing individual warnings is coming from :)
David Simons (Sep 14 2021 at 11:33):
PS: the is-a should work, right?
<compose>
<include>
<system value="http://snomed.info/sct"/>
<filter>
<property value="concept"/>
<op value="is-a"/>
<value value="106063007"/>
</filter>
</include>
</compose>
Rob Hausam (Sep 14 2021 at 11:38):
I'm also using descendent-of in some places. I don't recall seeing that particular message, but maybe I didn't look enough for it.
David Simons (Sep 14 2021 at 15:49):
PS: Surprisingly adding -txLog txLog.txt causes a whole slew of validation errors to appear, that were not there without this parameter... Seemingly sending null as values to the TXs??? Have not diven into this - removing the -txLog txLog.txt resolves it. Not a major issue for us now.
Grahame Grieve (Sep 14 2021 at 16:39):
descendent-of works in Snomed CT but not for other code systems
Grahame Grieve (Sep 14 2021 at 16:48):
actually, it works on the server, but not in the mini-terminology service included inside the validator. It will next release
Rob Hausam (Sep 14 2021 at 21:01):
Yes, I think that could be the explanation for some things.
Last updated: Apr 12 2022 at 19:14 UTC
