Stream: genomics
Topic: Add exmaples and code systems for Sequence.quality
yiwang (Aug 19 2016 at 14:41):
Hi, there. We wonder if we can make both an example and new local codes system for Sequence.quality, how to implement these on local build of fhir website. We need first create a demo in local build. @Gaston Fiore
Lloyd McKenzie (Aug 19 2016 at 16:43):
@yiwang Are you wanting to be able to validate using the standard validator, or you're just wanting to craft an example instance?
yiwang (Aug 19 2016 at 16:46):
I hope to create an exmaple instance first to see if it meets the requirement. : )
Lloyd McKenzie (Aug 19 2016 at 16:48):
Make up a URL for your code system and stick it in the "system" property for your Coding and put your code in your "code" property and you're good to go. (Convention is to use "http://example.org/[something-or-other]" to make clear to people that it's not a real code system and to reduce the likelihood of it actually finding its way into production.
yiwang (Aug 19 2016 at 16:49):
@Lloyd McKenzie There's no example about Sequence.quality instance , we need to first craft an instance according to the data on precisionFDA and further, to set up our own local code system or find correct code system for codeable concept of Sequence.quality.standardSequence and Sequence.quality.method, which needs to be implemented. I'm confused about the basic concept of what the standard validator is for?
Thx
yiwang (Aug 19 2016 at 16:50):
@Lloyd McKenzie thx, I will try this method first. : )
Lloyd McKenzie (Aug 19 2016 at 16:51):
If you wanted to check that your instance was valid against a profile that said you needed to use codes from a particular code system, you'd need to define a CodeSystem and ValueSet resource instance to define the codes and reference those codes and then point to the ValueSet from your profile and make all of those things available to the validator.jar so it could check your instance. But it doesn't sound like you need to go that far yet.
yiwang (Aug 19 2016 at 16:53):
@Lloyd McKenzie As for the present time, yes, I don't need go that far.
Last updated: Apr 12 2022 at 19:14 UTC
