Stream: genomics
Topic: 2021-05 WGM
Kevin Power (May 24 2021 at 14:37):
Hello #genomics community! We are down to a little less than 1.5 hours till our first session! Looking forward to a great week. As a reminder, in the first session, we are in a joint session with FHIR-I, so when you look at Whova, make sure to join the FHIR-I session, not the Clin Gen session:
image.png
Not the View Session with the X, but the View Session I circled.
Kevin Power (May 24 2021 at 17:55):
5 minutes till next session!
https://whova.com/portal/webapp/hmwgm_202105/Agenda/1553244
Kevin Power (May 25 2021 at 13:46):
Tuesday Q3 session (Joint with O&O) starts in 15 minutes!
As a reminder to everyone - Please join the Orders and Observations stream, not the Clinical Genomics stream!
Patrick Werner (May 25 2021 at 13:57):
direct link to the joint O&O: https://whova.com/portal/webapp/hmwgm_202105/Agenda/1553351
Kevin Power (May 25 2021 at 15:51):
Tuesday Q4 session starts in 10 minutes!
Kevin Power (May 25 2021 at 17:59):
Tuesday Q5 session starts, well, almost now! :smile:
Kevin Power (May 25 2021 at 20:14):
Thanks everyone who attended! Please review the notes:
https://confluence.hl7.org/display/CGW/2021-05+CG+WGM+Minutes
We will plan to quick approve them at the start of our first session tomorow.
Kevin Power (May 26 2021 at 13:46):
Hello #genomics friends - Wednesday Q3 session starts in less than 15 minutes!
Kevin Power (May 26 2021 at 17:47):
Last session for today starts in ~ 13 minutes!
Karen Fairchild (May 26 2021 at 23:17):
In our WGM today I had mentioned another ClinVar identifier in addition to the variant_id. It is the "RCVaccession" that I run across in some of our client's VCF files instead of the ClinVar variant id. The dbSNP database also holds that identifier in NCBI json ftp files we use. Defined in the ClinVar data dictionary as: "The accession for a reviewed assertion, provided by NCBI after aggregating data from multiple submissions, or assigned to submissions from professional societies. Here is a sample dbSNP snippet of a json entry showing that: (it also has a bunch of hgvs equivalents also with SPDI, etc., etc., etc.)
{
"refsnp_id": "268",
"create_date": "2000-09-19T17:02Z",
"last_update_date": "2017-09-26T22:33Z",
"last_update_build_id": "150",
. . .
{
"id": {
**"type": "clinvar",
"value": "RCV000001615.2"**
},
"revision_added": "150",
"create_date": "2017-09-26T22:33Z",
"submitter_handle": ""
}
],
"anchor": "NC_000008.11:0019956017:1:snv",
"variant_type": "snv"
}
}
Kevin Power (May 27 2021 at 15:55):
Hello #genomics ! First session of our last day starts in 5 minutes!
Kevin Power (May 27 2021 at 16:10):
Hi #genomics - We only have 4 attendees, so please join if you can today :smile:
Kevin Power (May 27 2021 at 17:34):
Last session starts in 25 minutes!
Last updated: Apr 12 2022 at 19:14 UTC
