Stream: hapi
Topic: Valueset POST fails
Nath (Jun 10 2020 at 04:54):
Hello Implementers,
I have been desperately create a valueset in JPA hapi server. I tried this and its erroring out with the following error mgs
I tried this sample valueset from here http://hl7.org/fhir/R4/valueset-relatedperson-relationshiptype.json. I tried to post to my hapi jpa server.
curl --location --request POST 'http://localhost:8080/fhir/ValueSet' \
--header 'Content-Type: application/fhir+json' \
--header 'Cookie: JSESSIONID=45A8B8827CD707FD9A0CF7D25B5D0B41' \
--data-raw '{
"resourceType" : "ValueSet",
"id" : "relatedperson-relationshiptype",
"meta" : {
"lastUpdated" : "2019-11-01T09:29:23.356+11:00",
"profile" : ["http://hl7.org/fhir/StructureDefinition/shareablevalueset"]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><h2>Patient relationship type</h2><div><p>A set of codes that can be used to indicate the relationship between a Patient and a Related Person.</p>\n</div><p>This value set includes codes from the following code systems:</p><ul><li>Include all codes defined in <a href=\"v2/0131/index.html\"><code>http://terminology.hl7.org/CodeSystem/v2-0131</code></a></li><li>Include codes from <a href=\"v3/RoleCode/cs.html\"><code>http://terminology.hl7.org/CodeSystem/v3-RoleCode</code></a> where concept is-a <a href=\"v3/RoleCode/cs.html#v3-RoleCode-_PersonalRelationshipRoleType\">_PersonalRelationshipRoleType</a></li></ul></div>"
},
"extension" : [{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "pa"
}],
"url" : "http://hl7.org/fhir/ValueSet/relatedperson-relationshiptype",
"identifier" : [{
"system" : "urn:ietf:rfc:3986",
"value" : "urn:oid:2.16.840.1.113883.4.642.3.449"
}],
"version" : "4.0.1",
"name" : "PatientRelationshipType",
"title" : "Patient relationship type",
"status" : "draft",
"experimental" : false,
"date" : "2019-11-01T09:29:23+11:00",
"publisher" : "FHIR Project team",
"contact" : [{
"telecom" : [{
"system" : "url",
"value" : "http://hl7.org/fhir"
}]
}],
"description" : "A set of codes that can be used to indicate the relationship between a Patient and a Related Person.",
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/v2-0131"
},
{
"system" : "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
"filter" : [{
"property" : "concept",
"op" : "is-a",
"value" : "_PersonalRelationshipRoleType"
}]
}]
}
}'
but I got back this error
{
"resourceType": "OperationOutcome",
"issue": [
{
"severity": "error",
"code": "processing",
"diagnostics": "Failed to call access method: org.springframework.dao.InvalidDataAccessApiUsageException: No EntityManager with actual transaction available for current thread - cannot reliably process 'persist' call; nested exception is javax.persistence.TransactionRequiredException: No EntityManager with actual transaction available for current thread - cannot reliably process 'persist' call"
}
]
}
Can you please kindly help me ?. thanks for your help.
FYI, I also removed id (as suggested in Implementers forum) and tried still the same error. Can you please help?.
thanks
Nath (Jun 10 2020 at 19:06):
Hello Implementers, is there a workaround or a different way to load the valueset ?. This is most common usecase, I am sure many people might be using it. May be I don't know how to load this. Could you please kindly give some pointers on how others are loading in Hapi?. thanks for your help.
Frederik Leonhardt (Jun 11 2020 at 05:51):
Is this with the Spring Boot HAPI server? If so I think that's a known bug (https://github.com/jamesagnew/hapi-fhir/issues/1594), I've had success POSTing the resource(s) within a transaction bundle instead.
Nath (Jun 11 2020 at 15:10):
thanks @Frederik Leonhardt . yea, the same error as in this issue just that it says for PUT but I was trying POST. So, its basically an issue for both Post and Put. I will try to wrap in a txn bundle and try it. thanks for your help. appreciate it.
Nath (Jun 12 2020 at 02:50):
I tried with wrapping in a bundle but I get this error
curl --location --request POST 'http://localhost:8090/fhir' \
--header 'Content-Type: application/fhir+json' \
--header 'X-Platform-Key: Bearer eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzUxMiJ9.eyJpYXQiOjE1OTE4Mjc3MDAsImV4cCI6MTU5Mjc1NjUwMCwiaXNzIjoiaHR0cHM6Ly9wbGF0Zm9ybS5uYXZpZnkuY29tIiwic3ViIjoiZTVlMzg0ZmYtMTc0MC00ZWQ0LWFkYmItZTUxOGRiMjRjYmMwIiwidGVuYW50X2lkIjoiMGYwNWEyNDAtZjI5YS0xMWU4LWE4ZDEtYWZkZGM2OWM0ZGI5Iiwicm9sZXMiOlsicGxhdGZvcm1BZG1pbiJdLCJjbGFpbXMiOlsicmVhZEFwcHMiLCJyZWFkQXBwIiwidXBkYXRlQXBwcyIsImRlbGV0ZUFwcHMiLCJkZXBsb3lBcHBzIl19.wjqxx6-Ypn-zEeqQLFCxBdGxUKIsmOh1t8O9pAiJRCp3lVQYSmNBLxvX23NNtjZBj_OvxvTIg62WKiWhiA_Rym2yA24od99TnFb0PnNrQHZjZ-PnjymqQWsk8fDRbFY3bGgL1J-hZhchjO55AjYzIYd-c-s2EWGI9jR5XE98EIsSULZMlpXnp91Bvs7Xz__bKCWP63MmoNBmZNfe_R9r0bFLLBuR9oKicZcNB6eo8FkRn8qGIFKEkNwG8TnIpq9bWTgBkZoVRsIcm3G_S8EQZbne28tXlD3cMKJdXDYr_n5zIR0K8lOXKSlCGCX7jZ2swhTYVewqfqhBeiRpEPMhaQ' \
--header 'Cookie: JSESSIONID=BBAF1280718966F3969D5CDE6AF046FD' \
--data-raw '{
"resourceType": "Bundle",
"type": "transaction",
"entry": [
{
"resource" : "ValueSet",
"id" : "action-type",
"meta" : {
"lastUpdated" : "2019-11-01T09:29:23.356+11:00",
"profile" : ["http://hl7.org/fhir/StructureDefinition/shareablevalueset"]
},
"text" : {
"status" : "generated",
"div" : "<div>!-- Snipped for Brevity --></div>"
},
"extension" : [{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "cds"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode" : "trial-use"
},
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
"valueInteger" : 2
}],
"url" : "http://hl7.org/fhir/ValueSet/action-type",
"identifier" : [{
"system" : "urn:ietf:rfc:3986",
"value" : "urn:oid:2.16.840.1.113883.4.642.3.809"
}],
"version" : "4.0.1",
"name" : "ActionType",
"title" : "ActionType",
"status" : "draft",
"experimental" : false,
"date" : "2019-11-01T09:29:23+11:00",
"publisher" : "HL7 (FHIR Project)",
"contact" : [{
"telecom" : [{
"system" : "url",
"value" : "http://hl7.org/fhir"
},
{
"system" : "email",
"value" : "fhir@lists.hl7.org"
}]
}],
"description" : "The type of action to be performed.",
"immutable" : true,
"compose" : {
"include" : [{
"system" : "http://terminology.hl7.org/CodeSystem/action-type"
}]
},
"request": {
"method": "POST",
"url": "/ValueSet"
}
}
]
}'
Error
{
"resourceType": "OperationOutcome",
"issue": [
{
"severity": "error",
"code": "processing",
"diagnostics": "theResource must not be null"
}
]
}
stacktrace
020-06-11 19:49:24.652 WARN 20217 --- [nio-8090-exec-2] ca.uhn.fhir.parser.LenientErrorHandler : Unknown attribute 'value' found while parsing
2020-06-11 19:49:24.660 ERROR 20217 --- [nio-8090-exec-2] c.u.f.r.s.i.ExceptionHandlingInterceptor : Failure during REST processing: java.lang.NullPointerException: theResource must not be null
java.lang.NullPointerException: theResource must not be null
at org.apache.commons.lang3.Validate.notNull(Validate.java:225) ~[commons-lang3-3.9.jar!/:3.9]
at ca.uhn.fhir.context.FhirContext.getResourceDefinition(FhirContext.java:428) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.ParserState$PreResourceState.stitchBundleCrossReferences(ParserState.java:1055) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.ParserState$PreResourceState.endingElement(ParserState.java:950) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.ParserState.endingElement(ParserState.java:106) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.JsonParser.parseChildren(JsonParser.java:1112) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.JsonParser.parseChildren(JsonParser.java:1015) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.JsonParser.parseChildren(JsonParser.java:1098) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.JsonParser.parseChildren(JsonParser.java:1079) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.JsonParser.parseChildren(JsonParser.java:1015) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.JsonParser.doParseResource(JsonParser.java:196) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.JsonParser.doParseResource(JsonParser.java:178) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.parser.BaseParser.parseResource(BaseParser.java:710) ~[hapi-fhir-base-4.2.0.jar!/:na]
at ca.uhn.fhir.rest.server.method.ResourceParameter.loadResourceFromRequest(ResourceParameter.java:184) ~[hapi-fhir-server-4.2.0.jar!/:na]
at ca.uhn.fhir.rest.server.method.ResourceParameter.parseResourceFromRequest(ResourceParameter.java:227) ~[hapi-fhir-server-4.2.0.jar!/:na]
at ca.uhn.fhir.rest.server.method.TransactionParameter.translateQueryParametersIntoServerArgument(TransactionParameter.java:85) ~[hapi-fhir-server-4.2.0.jar!/:na]
at ca.uhn.fhir.rest.server.method.BaseMethodBinding.createMethodParams(BaseMethodBinding.java:98) ~[hapi-fhir-server-4.2.0.jar!/:na]
at ca.uhn.fhir.rest.server.method.BaseResourceReturningMethodBinding.doInvokeServer(BaseResourceReturningMethodBinding.java:245) ~[hapi-fhir-server-4.2.0.jar!/:na]
at ca.uhn.fhir.rest.server.method.BaseResourceReturningMethodBinding.invokeServer(BaseResourceReturningMethodBinding.java:384) ~[hapi-fhir-server-4.2.0.jar!/:na]
at ca.uhn.fhir.rest.server.RestfulServer.handleRequest(RestfulServer.java:1002) ~[hapi-fhir-server-4.2.0.jar!/:na]
at ca.uhn.fhir.rest.server.RestfulServer.doPost(RestfulServer.java:346) ~[hapi-fhir-server-4.2.0.jar!/:na]
Last updated: Apr 12 2022 at 19:14 UTC
