FHIR Chat · BUG: Java, FHIR R4, Converting Bundle to Json · hapi

Stream: hapi

Topic: BUG: Java, FHIR R4, Converting Bundle to Json

view this post on Zulip Zak Guler (Jul 07 2020 at 20:56):

The issue is when I convert Bundle object to a json fhir document, the reference id ads the resource type to the id.

EX: FHIRConfig.getCtx().newJsonParser().setPrettyPrint(prettyPrint).encodeResourceToString(msgBundle);
will produce the following:
..
"reference": "Patient/04f2325e-b068-4a6e-9990-87147e918922"
},
{
"reference": "Practitioner/5ece02c6-551f-46ca-a35f-8b502e849fdd"
},
{
"reference": "Observation/0e179660-6c5e-4e87-af53-9935c57d3a59"
..
What can I do to make sure the resource type is NOT tagged with the id in the output chir document:
"reference": "04f2325e-b068-4a6e-9990-87147e918922"

your help is appreciated.
thanx

view this post on Zulip Grahame Grieve (Jul 07 2020 at 22:06):

please start by providing code so we know how you are converting

view this post on Zulip Zak Guler (Jul 08 2020 at 18:26):

-first we call the @Search get method in the [FHIR-CLIENT] SearchController.
-the search method calls the [FHIR-SERVER] to get the DeathRecord [Bundle].

    -control goes to the @Search method in the [FHIR-CLIENT] PatientResourceProvider class.
        -[FHIR-CLIENT] passes the parameters to the search method in PatientDao class.
        -[FHIR-CLIENT] goes to EdenmasterService class [findEdenmasterBundles()] to get the data from the database.
        -[FHIR-CLIENT] back to PatientDao to convert the Patient data to a bundle: bundle = edenmasterEntityToFHIRPatient.convertToBundles(edenmasters)
        -[FHIR-CLIENT] in EdenmasterEntityToFHIRPatient...convertToBundles(edenmasters) is where the magic starts:
                            builds the Bundle, Patient, Composition, Observations...etc

    -control comes back to the @Search method in PatientResourceProvider to return as a Bundle object.

-[FHIR-CLIENT] back in the SearchController, the DeathRecordSubmission class merges the DeathRecord[bundle] with other resource types and creates a new expanded bundle.
-[FHIR-CLIENT] DeathRecordSubmission.toJson(-the new bundle-):

                return FHIRConfig.getCtx().newJsonParser().setPrettyPrint(prettyPrint).encodeResourceToString(msgBundle);

the full FHIR Document output is attached with this message.

Note:
The interesting thing is, when I generate the fhie document by calling the FHIR-Server from a tool like POSTMAN, it gereates the reference ids properly without the resourceTypes tagged to it.
the conversion in the FHIR-Server does not call the FHIRConfig.getCtx().newJsonParser().setPrettyPrint(prettyPrint).encodeResourceToString(msgBundle).

I am also attaching the clean file with this message.

please let me know if you need additional info.
thank you very much for your help in advance.
Zak

Fhir_Server_SRC_Chat_Fhir_Org.zip

To_NCHS_udoh_fhir_client_R4_Chat_Fhir_Org.zip FHIR_Doc_ReferenceIds_tagged_with_resourceTypes_Chat_Fhir_org.txt FHIR_Doc_ReferenceIds_withOUT_resourceTypes_Chat_Fhir_org.txt

view this post on Zulip Zak Guler (Jul 13 2020 at 15:59):

Hi any luck with this issue? did I provide you with more code than you requested?

Last updated: Apr 12 2022 at 19:14 UTC


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