Stream: implementers
Topic: HAPI FHIR: Validator is set to not fetch unknown profiles
Jonas Franke (Oct 19 2021 at 16:24):
Hi,
I am currently setting up a HAPI FHIR Server (jpaserver-starter to be clear) which uses the Repository Validating Interceptor in order to validate its resources. Whenever I specifiy a profile in the meta of the requests body for which I require a validation I am getting the following error in my outcome:
<issue>
<severity value="error"/>
<code value="processing"/>
<diagnostics value="Profile reference 'https://fhir.kbv.de/StructureDefinition/KBV_PR_EAU_Condition_ICD|1.0.2' has not been checked because it is unknown, and the validator is set to not fetch unknown profiles"/>
<location value="Condition.meta.profile[0]"/>
<location value="Line 1, Col 40"/>
</issue>
I've set the following properties in AppProperties.java in order to overcome this (but I had no success so far):
- allow_external_references = true;
- enable_repository_validating_interceptor = true;
- refuse_to_fetch_third_party_urls = false;
- requests_enabled = true;
- responses_enabled = true;
Has anybody in this community faced the same issue or does somebody know how i can set my validator to also fetch unknown profiles?
Greetings :)
Lloyd McKenzie (Oct 19 2021 at 18:12):
Probably best to ask on #hapi
Jens Villadsen (Oct 19 2021 at 18:19):
@Jonas Franke please show your application.yaml file
Jens Villadsen (Oct 19 2021 at 18:19):
It sounds like you havent installed the profiles/IG's
Jonas Franke (Oct 20 2021 at 07:46):
spring:
datasource:
url: 'jdbc:h2:file:./target/database/h2'
#url: jdbc:h2:mem:test_mem
username: sa
password: null
driverClassName: org.h2.Driver
max-active: 15
# database connection pool size
hikari:
maximum-pool-size: 10
jpa:
properties:
hibernate.format_sql: false
hibernate.show_sql: false
# hibernate.dialect: org.hibernate.dialect.h2dialect
# hibernate.hbm2ddl.auto: update
# hibernate.jdbc.batch_size: 20
# hibernate.cache.use_query_cache: false
# hibernate.cache.use_second_level_cache: false
# hibernate.cache.use_structured_entries: false
# hibernate.cache.use_minimal_puts: false
### These settings will enable fulltext search with lucene
# hibernate.search.enabled: true
# hibernate.search.backend.type: lucene
# hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiLuceneAnalysisConfigurer
# hibernate.search.backend.directory.type: local-filesystem
# hibernate.search.backend.directory.root: target/lucenefiles
# hibernate.search.backend.lucene_version: lucene_current
batch:
job:
enabled: false
main:
# TODO 5.6.0 -> Prevent duplicate bean definitions in the Spring batch config in HAPI: see:
allow-bean-definition-overriding: true
hapi:
fhir:
### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5
fhir_version: R4
### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers
### to determine the FHIR server address
# use_apache_address_strategy: false
### forces the use of the https:// protocol for the returned server address.
### alternatively, it may be set using the X-Forwarded-Proto header.
# use_apache_address_strategy_https: false
### enable to set the Server URL
# server_address: http://hapi.fhir.org/baseR4
# defer_indexing_for_codesystems_of_size: 101
# install_transitive_ig_dependencies: true
# implementationguides:
### example from registry (packages.fhir.org)
# swiss:
# name: swiss.mednet.fhir
# version: 0.8.0
# example not from registry
# ips_1_0_0:
# url: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz
# name: hl7.fhir.uv.ips
# version: 1.0.0
# supported_resource_types:
# - Patient
# - Observation
# allow_cascading_deletes: true
# allow_contains_searches: true
allow_external_references: true
# allow_multiple_delete: true
# allow_override_default_search_params: true
# auto_create_placeholder_reference_targets: false
# cql_enabled: true
# default_encoding: JSON
# default_pretty_print: true
# default_page_size: 20
# delete_expunge_enabled: true
enable_repository_validating_interceptor: true
# enable_index_missing_fields: false
# enable_index_contained_resource: false
# enforce_referential_integrity_on_delete: false
# enforce_referential_integrity_on_write: false
# etag_support_enabled: true
# expunge_enabled: true
# daoconfig_client_id_strategy: null
# client_id_strategy: ALPHANUMERIC
# fhirpath_interceptor_enabled: false
# filter_search_enabled: true
# graphql_enabled: true
# narrative_enabled: true
# mdm_enabled: true
# partitioning:
# allow_references_across_partitions: false
# partitioning_include_in_search_hashes: false
cors:
allow_Credentials: true
# These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List-
allowed_origin:
- '*'
# Search coordinator thread pool sizes
search-coord-core-pool-size: 20
search-coord-max-pool-size: 100
search-coord-queue-capacity: 200
# logger:
# error_format: 'ERROR - ${requestVerb} ${requestUrl}'
# format: >-
# Path[${servletPath}] Source[${requestHeader.x-forwarded-for}]
# Operation[${operationType} ${operationName} ${idOrResourceName}]
# UA[${requestHeader.user-agent}] Params[${requestParameters}]
# ResponseEncoding[${responseEncodingNoDefault}]
# log_exceptions: true
# name: fhirtest.access
# max_binary_size: 104857600
# max_page_size: 200
# retain_cached_searches_mins: 60
# reuse_cached_search_results_millis: 60000
tester:
home:
name: Local Tester
server_address: 'http://localhost:8080/fhir'
refuse_to_fetch_third_party_urls: false
fhir_version: R4
global:
name: Global Tester
server_address: "http://hapi.fhir.org/baseR4"
refuse_to_fetch_third_party_urls: false
fhir_version: R4
validation:
requests_enabled: true
responses_enabled: true
# binary_storage_enabled: true
# bulk_export_enabled: true
# subscription:
# resthook_enabled: true
# websocket_enabled: false
# email:
# from: some@test.com
# host: google.com
# port:
# username:
# password:
# auth:
# startTlsEnable:
# startTlsRequired:
# quitWait:
# lastn_enabled: true
### This is configuration for normalized quantity serach level default is 0
### 0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default
### 1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED
### 2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED
# normalized_quantity_search_level: 2
#elasticsearch:
# debug:
# pretty_print_json_log: false
# refresh_after_write: false
# enabled: false
# password: SomePassword
# required_index_status: YELLOW
# rest_url: 'localhost:9200'
# protocol: 'http'
# schema_management_strategy: CREATE
# username: SomeUsername
Last updated: Apr 12 2022 at 19:14 UTC