Stream: implementers
Topic: FHIR R3/R4 conversion
manasvi sharma (Feb 14 2020 at 05:42):
I am unable to transform a JSON file in STU 3 to R4 . I am using FHIR validator but it is unable to load the hl7.fhir.transforms.v4v3 implementation guide.
Lloyd McKenzie (Feb 14 2020 at 06:32):
Can you provide the details of the error you're getting?
manasvi sharma (Feb 14 2020 at 06:49):
when I run the following cmd:
java -jar org.hl7.fhir.validator.jar [r3-resource] -transform http://hl7.org/fhir/StructureMap/XX3to4 -ig hl7.fhir.transforms.v4v3 -output [dest-name]
I am getting the following error:
- .. load IG from hl7.fhir.transforms.v4v3
Exception in thread "main" org.hl7.fhir.exceptions.FHIRException: Unable to resolve the package 'hl7.fhir.transforms.v4v3'
at org.hl7.fhir.utilities.cache.PackageCacheManager.loadPackage(PackageCacheManager.java:674)
at org.hl7.fhir.r5.validation.ValidationEngine.resolvePackage(ValidationEngine.java:631)
at org.hl7.fhir.r5.validation.ValidationEngine.fetchByPackage(ValidationEngine.java:620)
at org.hl7.fhir.r5.validation.ValidationEngine.loadIgSource(ValidationEngine.java:459)
at org.hl7.fhir.r5.validation.ValidationEngine.loadIg(ValidationEngine.java:723)
at org.hl7.fhir.r5.validation.Validator.main(Validator.java:577)
manasvi sharma (Feb 20 2020 at 06:25):
I transformed a JSON file from STU 3 for to R4
using the FHIR validator jar
Using the following code to transform :
org.hl7.fhir.r4.model.Patient inR4= converter. convertPatient (p1);
this program is converting the version but the urls like the system in identifier as shown below
“identifier”: [
{
“use”: “usual”,
“type”: {
“coding”: [
{
“system”: “http://hl7.org/fhir/v2/0203”,
“code”: “MR”
}
]
}
are the same so the response is failing the validation for version 4.0.1 of the FHIR validator
I cant seem to find any code regarding the transformation of urls
do we need to change the urls? and how we do it?
Lloyd McKenzie (Feb 20 2020 at 06:41):
Yes, you'll need to change the URLs. the v2, v3 and some of the FHIR code systems moved to the terminology.hl7.org root. @Grahame Grieve, is this translation something we could add into translation code - at least for the v2 and v3 stuff? (FHIR stuff is messier because not all of it moves.)
Lloyd McKenzie (Feb 20 2020 at 06:42):
Side note - please don't ask the same question here and on stack overflow simultaneously - pick one and give the community time to respond before asking in the other place...
manasvi sharma (Feb 24 2020 at 05:25):
In the list of all the changes (https://www.hl7.org/fhir/diff.html)
under Patient column there is no change in "system" field mentioned but it has been moved to terminology.hl7.org root
so is there a list of all the changes in the urls?
Grahame Grieve (Feb 24 2020 at 05:28):
I haven't made a list of those.
manasvi sharma (Feb 24 2020 at 05:36):
Can you give the estimate of time when this information will be provided? or if you let me know a way to get this information it would be really helpful
Grahame Grieve (Mar 03 2020 at 06:56):
ok see https://confluence.hl7.org/display/FHIR/Using+the+FHIR+Validator#UsingtheFHIRValidator-VersionConversion. new release tomorrow, that does this tomorrow
manasvi sharma (Mar 09 2020 at 08:45):
Thank you.I will look into this
Also how to convert a Claim type resource? I cant seems to find any conversion code for claim type resource in the validator.
manasvi sharma (Mar 09 2020 at 10:17):
when I run the following command :
java -jar org.hl7.fhir.validator.jar /Users/anuragshukla/Desktop/eobject/input/test1.json -version 3.0 -to-version 4.0 -output /Users/anuragshukla/Desktop/eobject/out.json
it gives the following error:
...Failure: No matches found for rule for 'id to id' from http://hl7.org/fhir/StructureMap/Resource3to4, from rule 'Resource-id'
org.hl7.fhir.exceptions.FHIRException: No matches found for rule for 'id to id' from http://hl7.org/fhir/StructureMap/Resource3to4, from rule 'Resource-id'
at org.hl7.fhir.r5.utils.StructureMapUtilities.resolveGroupByTypes(StructureMapUtilities.java:1577)
at org.hl7.fhir.r5.utils.StructureMapUtilities.executeRule(StructureMapUtilities.java:1428)
at org.hl7.fhir.r5.utils.StructureMapUtilities.executeGroup(StructureMapUtilities.java:1398)
at org.hl7.fhir.r5.utils.StructureMapUtilities.executeGroup(StructureMapUtilities.java:1394)
at org.hl7.fhir.r5.utils.StructureMapUtilities.executeGroup(StructureMapUtilities.java:1394)
at org.hl7.fhir.r5.utils.StructureMapUtilities.transform(StructureMapUtilities.java:1360)
at org.hl7.fhir.validation.ValidationEngine.transformVersion(ValidationEngine.java:1729)
at org.hl7.fhir.validation.Validator.main(Validator.java:612)
Grahame Grieve (Mar 09 2020 at 20:02):
what is in test1.json?
manasvi sharma (Mar 11 2020 at 04:25):
it is a JSON file of Patient Resource type in STU 3
an example of Patient Resource given on FHIR website
Last updated: Apr 12 2022 at 19:14 UTC
