FHIR Chat · Error in local build · committers

Stream: committers

Topic: Error in local build

view this post on Zulip Jose Costa Teixeira (Aug 09 2018 at 21:12):

Hi. I am suddenly getting an issue in my build - perhaps someone can advise?

view this post on Zulip Jose Costa Teixeira (Aug 09 2018 at 21:12):

 [java] This was a Full Build                                                      0.298  62sec  675MB
 [java] java.io.IOException: Error parsing JSON source: Unexpected char '<' in json stream at Line 1 (path=[null])
 [java]     at org.hl7.fhir.r4.utils.formats.JsonTrackingParser$Lexer.error(JsonTrackingParser.java:170)
 [java]     at org.hl7.fhir.r4.utils.formats.JsonTrackingParser$Lexer.next(JsonTrackingParser.java:292)
 [java]     at org.hl7.fhir.r4.utils.formats.JsonTrackingParser$Lexer.start(JsonTrackingParser.java:195)
 [java]     at org.hl7.fhir.r4.utils.formats.JsonTrackingParser$Lexer.<init>(JsonTrackingParser.java:106)
 [java]     at org.hl7.fhir.r4.utils.formats.JsonTrackingParser.parse(JsonTrackingParser.java:323)
 [java]     at org.hl7.fhir.r4.utils.formats.JsonTrackingParser.parse(JsonTrackingParser.java:319)
 [java]     at org.hl7.fhir.r4.formats.JsonParserBase.loadJson(JsonParserBase.java:167)
 [java]     at org.hl7.fhir.r4.formats.JsonParserBase.parse(JsonParserBase.java:91)
 [java]     at org.hl7.fhir.r4.context.BaseWorkerContext.loadFromCache(BaseWorkerContext.java:393)
 [java]     at org.hl7.fhir.r4.context.BaseWorkerContext.expandVS(BaseWorkerContext.java:356)
 [java]     at org.hl7.fhir.definitions.generators.xsd.XSDGenerator.generateEnum(XSDGenerator.java:142)
 [java]     at org.hl7.fhir.definitions.generators.xsd.XSDGenerator.generate(XSDGenerator.java:126)
 [java]     at org.hl7.fhir.definitions.generators.xsd.SchemaGenerator.generate(SchemaGenerator.java:86)
 [java]     at org.hl7.fhir.tools.publisher.Publisher.produceSpecification(Publisher.java:2151)
 [java]     at org.hl7.fhir.tools.publisher.Publisher.execute(Publisher.java:647)
 [java]     at org.hl7.fhir.tools.publisher.Publisher.main(Publisher.java:482)
 [java] FHIR build failure @ Thu, Aug 9, 2018 23:10+0200                           1.127  63sec  675MB
 [java] Error: null
 [java] java.lang.NullPointerException
 [java]     at org.hl7.fhir.definitions.generators.xsd.XSDGenerator.generateEnum(XSDGenerator.java:143)
 [java]     at org.hl7.fhir.definitions.generators.xsd.XSDGenerator.generate(XSDGenerator.java:126)
 [java]     at org.hl7.fhir.definitions.generators.xsd.SchemaGenerator.generate(SchemaGenerator.java:86)
 [java]     at org.hl7.fhir.tools.publisher.Publisher.produceSpecification(Publisher.java:2151)
 [java]     at org.hl7.fhir.tools.publisher.Publisher.execute(Publisher.java:647)
 [java]     at org.hl7.fhir.tools.publisher.Publisher.main(Publisher.java:482)
 [java] Exception in thread "main" java.lang.NullPointerException
 [java]     at java.io.Writer.write(Writer.java:157)
 [java]     at org.hl7.fhir.utilities.TextFile.stringToFile(TextFile.java:84)
 [java]     at org.hl7.fhir.utilities.TextFile.stringToFile(TextFile.java:102)
 [java]     at org.hl7.fhir.tools.publisher.Publisher.execute(Publisher.java:719)
 [java]     at org.hl7.fhir.tools.publisher.Publisher.main(Publisher.java:482)

view this post on Zulip Grahame Grieve (Aug 09 2018 at 21:23):

looks like you have an xml file in vscache...

view this post on Zulip Paul Knapp (Oct 12 2018 at 13:37):

Hi: getting a build error after a fresh pull from master with no changes on my local clone:
[java] ...resource CodeSystem 1.31 226sec 902MB
[java] Exception in thread "main" java.lang.Error: Case mismatch of file C:\FHIR_git1\fhir\publish\codesystem-medicationknowledge-status.html: found codesystem-medicationKnowledge-status.html
[java] at org.hl7.fhir.utilities.CSFile.<init>(CSFile.java:66)
[java] at org.hl7.fhir.utilities.TextFile.stringToFile(TextFile.java:101)
[java] at org.hl7.fhir.tools.publisher.Publisher.generateCodeSystemPart2(Publisher.java:6217)
[java] at org.hl7.fhir.tools.publisher.Publisher.generateCodeSystemsPart2(Publisher.java:6081)
[java] at org.hl7.fhir.tools.publisher.Publisher.loadValueSets2(Publisher.java:1289)
[java] at org.hl7.fhir.tools.publisher.Publisher.produceSpec(Publisher.java:2394)
[java] at org.hl7.fhir.tools.publisher.Publisher.produceSpecification(Publisher.java:2241)
[java] at org.hl7.fhir.tools.publisher.Publisher.execute(Publisher.java:629)
[java] at org.hl7.fhir.tools.publisher.Publisher.main(Publisher.java:487)

BUILD FAILED

view this post on Zulip Grahame Grieve (Oct 12 2018 at 18:55):

you need to delete all the files in C:\FHIR_git1\fhir\publish and then build again

view this post on Zulip Paul Knapp (Oct 12 2018 at 19:50):

Thanks, did, ran to implementation guides then:
[java] Errors: 0 Warnings: 689 Hints: 949
[java]
[java] ===Resources with FMM forced to 0===
[java] FHIR Infrastructure:
[java] CapabilityStatement(5), Group(1), ImplementationGuide(1), SearchParameter(3), StructureMap(2)
[java] 3.898 2551sec 4096MB
[java] ERROR @ org.hl7.fhir.igtools.tests.AllGuidesTests: testIg10(org.hl7.fhir.igtools.tests.AllGuidesTests): Process exited with an error: 1 (Exit value: 1) (src = Publisher)
[java] ERROR @ org.hl7.fhir.igtools.tests.AllGuidesTests: testIg14(org.hl7.fhir.igtools.tests.AllGuidesTests): Process exited with an error: 1 (Exit value: 1) (src = Publisher)
[java] ERROR @ org.hl7.fhir.igtools.tests.AllGuidesTests: testIg30(org.hl7.fhir.igtools.tests.AllGuidesTests): Process exited with an error: 1 (Exit value: 1) (src = Publisher)
[java] ERROR @ org.hl7.fhir.igtools.tests.AllGuidesTests: testIg40(org.hl7.fhir.igtools.tests.AllGuidesTests): Process exited with an error: 1 (Exit value: 1) (src = Publisher)
[java] This was a Full Build 1.12 2552sec 4096MB
[java] FHIR build failure @ Fri, Oct 12, 2018 22:42+0300 1.438 2553sec 4096MB
[java] Error: Errors executing build. Details logged.
[java] java.lang.Exception: Errors executing build. Details logged.
[java] at org.hl7.fhir.tools.publisher.Publisher.checkAllOk(Publisher.java:1859)
[java] at org.hl7.fhir.tools.publisher.Publisher.runJUnitTestsEnd(Publisher.java:5884)
[java] at org.hl7.fhir.tools.publisher.Publisher.validationProcess(Publisher.java:5852)
[java] at org.hl7.fhir.tools.publisher.Publisher.execute(Publisher.java:634)
[java] at org.hl7.fhir.tools.publisher.Publisher.main(Publisher.java:487)

BUILD FAILED
C:\FHIR_git1\fhir\build.xml:30: The following error occurred while executing this line:
C:\FHIR_git1\fhir\tools\java\org.hl7.fhir.tools.core\build.xml:156: Java returned: 1

view this post on Zulip Grahame Grieve (Oct 12 2018 at 19:54):

.. you'll not be keeping up with committers/announce then

view this post on Zulip Jamie Jones (Oct 12 2018 at 21:57):

Getting a new error with current publisher when attempting to build the CG IG:

[java] Load hl7.fhir.core-current package from /var/root/.fhir/packages/hl7.fhir.core#current (01.0083sec)
[java] exception generating new IG
[java] org.hl7.fhir.exceptions.FHIRFormatError: Unknown Content package @ START_TAG seen ... \n \n \n \n \n \n \n \n <package id="general">... @25:27
[java] at org.hl7.fhir.r4.formats.XmlParserBase.unknownContent(XmlParserBase.java:279)
[java] at org.hl7.fhir.r4.formats.XmlParser.parseImplementationGuideImplementationGuideDefinitionComponent(XmlParser.java:11895)
[java] at org.hl7.fhir.r4.formats.XmlParser.parseImplementationGuideContent(XmlParser.java:11828)
[java] at org.hl7.fhir.r4.formats.XmlParser.parseImplementationGuide(XmlParser.java:11781)
[java] at org.hl7.fhir.r4.formats.XmlParser.parseResource(XmlParser.java:24255)
[java] at org.hl7.fhir.r4.formats.XmlParserBase.parse(XmlParserBase.java:105)
[java] at org.hl7.fhir.r4.formats.XmlParserBase.parse(XmlParserBase.java:89)
[java] at org.hl7.fhir.igtools.publisher.ConfigFileConverter.parse(ConfigFileConverter.java:275)
[java] at org.hl7.fhir.igtools.publisher.ConfigFileConverter.convert(ConfigFileConverter.java:94)
[java] at org.hl7.fhir.igtools.publisher.Publisher.initializeFromJson(Publisher.java:1096)
[java] at org.hl7.fhir.igtools.publisher.Publisher.initialize(Publisher.java:945)
[java] at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:524)
[java] at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:4926)

Any ideas on the "FHIRFormatError: Unknown Content package @ START_TAG seen ... \n \n \n \n \n \n \n \n <package id="general">... @25:27"

Thanks!

view this post on Zulip Grahame Grieve (Oct 12 2018 at 22:24):

that's an R4 IG? you'll have to update the IG - look at http://build.fhir.org/implementationguide.html - you'll have to change the name of 'package' elements to grouping or groupingId

view this post on Zulip Lloyd McKenzie (Oct 12 2018 at 22:53):

The IGPublisher is now using a newer version of ImplementationGuide. Some stuff has been renamed. So the ImplementationGuide instance will need to be changed - and a bunch of other stuff in the framework will need to change too. I'll work on it over the weekend

view this post on Zulip Eric Haas (Oct 13 2018 at 04:02):

I got that same error that Paul did... I thought that git would eliminate these kind of things? do we need to delete the publish folder each time?

view this post on Zulip Lloyd McKenzie (Oct 13 2018 at 14:12):

This issue was caused by a re-name that just changed character case. It's a Windows issue of not realizing the case changed, not a Git issue. SVN would have had the same problem.

view this post on Zulip Eric Haas (Oct 13 2018 at 17:08):

Its also an OSX issue too

view this post on Zulip Grahame Grieve (Oct 13 2018 at 19:20):

the build insists that case names are correct. The build also leaves existing files in place while building. The downside of that is that if someone changes the name of a file by just case, you'll get this error. It's not a git thing - would have happened under svn too.

view this post on Zulip Jose Costa Teixeira (Sep 19 2020 at 07:00):

I'm trying to add a new draft resource but I get an error

     [java] java.lang.NullPointerException
     [java]     at org.hl7.fhir.tools.publisher.Publisher.generateSCMaps(Publisher.java:735)
     [java]     at org.hl7.fhir.tools.publisher.Publisher.generateSCMaps(Publisher.java:728)
     [java]     at org.hl7.fhir.tools.publisher.Publisher.execute(Publisher.java:621)
     [java]     at org.hl7.fhir.tools.publisher.Publisher.main(Publisher.java:487)

view this post on Zulip Jose Costa Teixeira (Sep 19 2020 at 07:00):

Can anyone tell me what to look for?

view this post on Zulip Grahame Grieve (Sep 19 2020 at 21:36):

you have a status element with a missing or unresolved value set binding

view this post on Zulip Jose Costa Teixeira (Sep 20 2020 at 08:57):

changed that, still broken.

view this post on Zulip Jose Costa Teixeira (Sep 20 2020 at 21:26):

any advice for this? I restarted the file and committed the branch but I got stuck

view this post on Zulip Grahame Grieve (Sep 20 2020 at 22:37):

still the same stack?

view this post on Zulip Jose Costa Teixeira (Sep 21 2020 at 07:23):

     [java] Error: null
     [java] java.lang.NullPointerException
     [java]     at org.hl7.fhir.tools.publisher.Publisher.generateSCMaps(Publisher.java:735)
     [java]     at org.hl7.fhir.tools.publisher.Publisher.generateSCMaps(Publisher.java:728)
     [java]     at org.hl7.fhir.tools.publisher.Publisher.execute(Publisher.java:621)
     [java]     at org.hl7.fhir.tools.publisher.Publisher.main(Publisher.java:487)

view this post on Zulip Jose Costa Teixeira (Sep 21 2020 at 08:25):

it's here : https://github.com/HL7/fhir/tree/costateixeira-supply

view this post on Zulip Grahame Grieve (Sep 22 2020 at 06:34):

well, you added it wrongly to status-codes.xml. I fixed that but there's other problems.

view this post on Zulip Jose Costa Teixeira (Sep 22 2020 at 11:36):

yes, that was silly. Found it, thanks

Last updated: Apr 12 2022 at 19:14 UTC


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